SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9159

Length: 3331 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9159
CGTCGTGACCTTGGCTGTCACTCAAGCAGAGGAACGAGAGCAGAAGAGACAGGCGGCCTGGGTTGAGCTGAAATTGTAGCTTTGGAAGAGAATTAGGTGTGGAGGCTCTGGGATTCGATCCGAGGTCGGAGGTCGCTTGAATCAAAGACCCCAAAACATATCAGATGGAGCAGAAGAACGTATTGATGTCGGCCCTCAGCGTGGGGCTCGGAATCGGCCTGGGTGTCGGACTCGCCACAGGCCGTTCGCAGACCTTTCAGAAATGGACGTCTCCCTGTTCTTCTGTCAATTACCAGGAAATAATGGAACTCGAGCTCAACAATCGCCTCCTTGACGGGAAATCTTGTAGTGTTACCTTCGAAGAATTCCCTTATTCCCTCAGTGAGCAGACGAAGGCTTTGTTGACGAGCGGGGCTTTTGTTTATTTGAAAGAAGAGCAGTTTTCTAAGTACACTCGAAATCTCTCGCCTGCGAGTCGAGCCATTTTGCTCTTGGGCCATGCAGAGCCCTACCACCAAATGCTTGCCAAGGCATTGGCACATTACTTTGATGCTAAATTGCTTTTGCTGGATGCTACTGACTTTTGCTTGAAGTTGCAAAGCAAACATGGAGGAGGCACTGATTCTGATTTAAAGTCCTTTTCTGAAGCTGCATTAGAGCGCATTGGTAGCCTGTTTGAATCCTTCACCCTGCCTACAGGTGCAGAGCAAAGAAATTGCAAATCAGCAGGCAGTCTTTGGCGATCAAACAGTGGCATTGAACCAAAGCTGACGTCCTCTGAAGGAACAAGTAACCTTCAAAGTTGTAGGAGTAACTCGGCATCAGAACCTGATTTCTCCAGATATGGGTCATCTGTGATGAACACCACAAATCAAGCTTCATTAAAACGTGCAAATTCTTGGTCATTTGACGACAAATTACTTGTGCGATCGCTTTATAAGGTCTTGGTTTCTGTCTCAAAGACTAGTCCTGTGATTTTGTATTTGCGGGATATTGAGAGACTTGTATTCAGAGGGCCAAAGACCTATCAAATGTTTTTTAATATGATAAAACAACTCTCTGGGCCCATTTTAATACTAGGTTCCAGAATCTTGGGCTCACAAGAGAAGCCATGCTATGGAGATACTGAGAAAAAGTTGTCAGATTTATTTCCCTATACCATTGACACAAAACCCCCAGAGGATAATACAGAACATGGGGCCTGGAAGAGCAAGCTTGAAGAGGACATGAAAGCAATCGAATTTCAAGACAACAGGAACCATGTATCAGAGATACTTGCAGCAAATGATGTTGAATGTGATGATTTGGGAAGCATTTCTTTTGGTGATACAATCCTTCTTAGTAATTATATTGAGGAAATTGTGGTCTCTGCGATTTCTCATCACCTCATGAACACAGAGCAGCCCGATTATCGTGGTGGACGTCTTATTATCTCTTCCAAAAGCTTGGCACATGGATTGAGCATATTCCAAGCAGGACAGATTGATAGCAAGGACACACTCCAAATGGAATCCAATGGAGAAAACCCACAGGATCCAACAAGTGGAAAGATTGAAGCAAAAATGGAGTCTCCTTCTACAGAAAAAAAACCTGAAGGGGAAAAAACAGATTCTGCTTCAAAGGGGGATATGCCTAAGAAAGAAGCAGATAACACTAAAGAAGGGGGTCCTGCAGCAACTCCGAAACCGGAAGTTCTTCCAGACAATGATTTTGAAAAGAGGATCAGACCGGAAGTCATTCCTGCAGGTAAAATTGGTGTTACATTTGATGACATTGGTGCACTGGAAAATGTTAAAGAATCACTGCAGGAACTTGTAATGCTACCTCTTCGACGGCCAGACTTGTTTAAGGGGGGTCTCCTTAAGCCATGCAAAGGCATTCTACTTTTTGGACCCCCTGGAACAGGGAAAACAATGCTAGCAAAGGCCCTTGCCACTGAGGCCAATGCCAGCTTTATAAATGTCTCAATGTCTACCATAACTTCAAAGTGGTTTGGAGAAGATGAGAAGAATGTAAGGGCATTGTTCTCTTTGGCTGCAAAAGTTTCCCCTACGATTATTTTCATTGATGAGGTTGACAGCATGTTAGGCCAAAGGTCTAGAGTTGGTGAACACGAGGCAATGAGGAAAATAAAGAACGAGTTTATGGCTCACTGGGATGGTTTGCTATCAAAGACTGCAGAGCGTGTTCTTGTTCTCGCTGCAACTAACAGACCTTTCGATTTGGATGAAGCTATAATCAGACGGTTTCAGCGAAGAATCATGGTTGGACTGCCAAATGCTGAGAGTAGAGAAAGAATTCTAAGGACACTCCTTGCAAAAGAGAAACTTGAGGAAGGCTTTGATTTCAAGGAGCTCGCAACAATGACAGATGGTTATACTGGCAGTGACCTCAAGAATCTATGTACAGCCGCAGCTTTTCGGCCAGTTCGGGATTTTCTGAAGACAGAGCAACAGAAAGAAAAGGCTAAGAAGAAAGAAGAGGAGAAGAAAGAAGAAGAGAAAAAGGAAGAGGCAACGAAAGAAGAGGAGAAAAAAGAAGACATAGGGGAGTCAGAGAACTCTGAACAATCTAGCAAGGAAGAGGAGAAGANNGNNNAGTAAGAAAGAAGAGGAGAAAAAGGAAGAGGTCGAGGAAACTGTCATTACCCTCAGACCTTTAACAATGGAGGATTTGAAACAAGCAAAGAGTCAGATTTCTCCAAGCTTTGCATCTGAAGGCGTTGGAATGAATGAACTCAAGGAATGGAATGAAATGTATGGAGAGGGTGGAAGCAGGAAAAAACAATCGCCAACTTACTTTTTGTAAGGCACTCAGATTTCATCTTGCGGCCCTAAAGGGAAATTAGCCAGTCCATTGCTTGATTGCCATTTGCAAGTCTGATGAATCTTCTATCTCTGGGAGCACACTCCATTGTCCAGGATTCACAGTTGGAAAACTCCTCAACCGCTGTAAATATGCCTTCAAATCGAATTTCTTTTCCTAGTGTCTGTTGCTTTGACTCTGCTGCTGGCCCAAAGGGAACATCAGTCTTATTCCACACTTAGTGAGGATTAGAGTTATTTGATTATTTCTACAGGGAAGATTTTCTCCCTTGCTCAACCTGAAATCACAGGTGTAATAGCTAGTTTGTATGTTTGTGTCACTGCTTCTGTCAGTGACTAATCTAGAGATATAAGATAGTTAATAATCAGTAGTAGGAGAACTATATTATTAGATTTCTCAGTGTAGTCATTATTTGCAGAGCTTGTATTGCCTGCCTTAAACAAATATATTGCTACTGCAAATGAGTTGTACGTTTTTGTTAGCAGCGAGTGCTATTTCTGCACCC

Ace file of the UniGene sp_v1.1_unigene9159

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein	-	-	61%
FL-Next	sp=Katanin p60 ATPase-containing subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	37%
Blast2go	aaa-type atpase family protein	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	75%
Blast2go	ATPase, AAA-type, core	IPR003959	-	75%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SEX2

Fln msg: your sequence is longer than subject: 813 - 523

Fln protein: MEQKNVLMSALSVGLGIGLGVGLATGRSQTFQKWTSPCSSVNYQEIMELELNNRLLDGKSCSVTFEEFPYSLSEQTKALLTSGAFVYLKEEQFSKYTRNLSPASRAILLLGHAEPYHQMLAKALAHYFDAKLLLLDATDFCLKLQSKHGGGTDSDLKSFSEAALERIGSLFESFTLPTGAEQRNCKSAGSLWRSNSGIEPKLTSSEGTSNLQSCRSNSASEPDFSRYGSSVMNTTNQASLKRANSWSFDDKLLVRSLYKVLVSVSKTSPVILYLRDIERLVFRGPKTYQMFFNMIKQLSGPILILGSRILGSQEKPCYGDTEKKLSDLFPYTIDTKPPEDNTEHGAWKSKLEEDMKAIEFQDNRNHVSEILAANDVECDDLGSISFGDTILLSNYIEEIVVSAISHHLMNTEQPDYRGGRLIISSKSLAHGLSIFQAGQIDSKDTLQMESNGENPQDPTSGKIEAKMESPSTEKKPEGEKTDSASKGDMPKKEADNTKEGGPAATPKPEVLPDNDFEKRIRPEVIPAGKIGVTFDDIGALENVKESLQELVMLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGLLSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFDFKELATMTDGYTGSDLKNLCTAAAFRPVRDFLKTEQQKEKAKKKEEEKKEEEKKEEATKEEEKKEDIGESENSEQSSKEEEKNVK*

Protein Length: 814

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAGAGGAACGAGAGCAGAAGAGACAGGCGGCCTGGGTTGAGCTGAAATTGTAGCTTTGGAAGAGAATTAGGTGTGGAGGCTCTGGGATTCGATCCGAGGTCGGAGGTCGCTTGAATCAAAGACCCCAAAACATATCAG_-_ATGGAGCAGAAGAACGTATTGATGTCGGCCCTCAGCGTGGGGCTCGGAATCGGCCTGGGTGTCGGACTCGCCACAGGCCGTTCGCAGACCTTTCAGAAATGGACGTCTCCCTGTTCTTCTGTCAATTACCAGGAAATAATGGAACTCGAGCTCAACAATCGCCTCCTTGACGGGAAATCTTGTAGTGTTACCTTCGAAGAATTCCCTTATTCCCTCAGTGAGCAGACGAAGGCTTTGTTGACGAGCGGGGCTTTTGTTTATTTGAAAGAAGAGCAGTTTTCTAAGTACACTCGAAATCTCTCGCCTGCGAGTCGAGCCATTTTGCTCTTGGGCCATGCAGAGCCCTACCACCAAATGCTTGCCAAGGCATTGGCACATTACTTTGATGCTAAATTGCTTTTGCTGGATGCTACTGACTTTTGCTTGAAGTTGCAAAGCAAACATGGAGGAGGCACTGATTCTGATTTAAAGTCCTTTTCTGAAGCTGCATTAGAGCGCATTGGTAGCCTGTTTGAATCCTTCACCCTGCCTACAGGTGCAGAGCAAAGAAATTGCAAATCAGCAGGCAGTCTTTGGCGATCAAACAGTGGCATTGAACCAAAGCTGACGTCCTCTGAAGGAACAAGTAACCTTCAAAGTTGTAGGAGTAACTCGGCATCAGAACCTGATTTCTCCAGATATGGGTCATCTGTGATGAACACCACAAATCAAGCTTCATTAAAACGTGCAAATTCTTGGTCATTTGACGACAAATTACTTGTGCGATCGCTTTATAAGGTCTTGGTTTCTGTCTCAAAGACTAGTCCTGTGATTTTGTATTTGCGGGATATTGAGAGACTTGTATTCAGAGGGCCAAAGACCTATCAAATGTTTTTTAATATGATAAAACAACTCTCTGGGCCCATTTTAATACTAGGTTCCAGAATCTTGGGCTCACAAGAGAAGCCATGCTATGGAGATACTGAGAAAAAGTTGTCAGATTTATTTCCCTATACCATTGACACAAAACCCCCAGAGGATAATACAGAACATGGGGCCTGGAAGAGCAAGCTTGAAGAGGACATGAAAGCAATCGAATTTCAAGACAACAGGAACCATGTATCAGAGATACTTGCAGCAAATGATGTTGAATGTGATGATTTGGGAAGCATTTCTTTTGGTGATACAATCCTTCTTAGTAATTATATTGAGGAAATTGTGGTCTCTGCGATTTCTCATCACCTCATGAACACAGAGCAGCCCGATTATCGTGGTGGACGTCTTATTATCTCTTCCAAAAGCTTGGCACATGGATTGAGCATATTCCAAGCAGGACAGATTGATAGCAAGGACACACTCCAAATGGAATCCAATGGAGAAAACCCACAGGATCCAACAAGTGGAAAGATTGAAGCAAAAATGGAGTCTCCTTCTACAGAAAAAAAACCTGAAGGGGAAAAAACAGATTCTGCTTCAAAGGGGGATATGCCTAAGAAAGAAGCAGATAACACTAAAGAAGGGGGTCCTGCAGCAACTCCGAAACCGGAAGTTCTTCCAGACAATGATTTTGAAAAGAGGATCAGACCGGAAGTCATTCCTGCAGGTAAAATTGGTGTTACATTTGATGACATTGGTGCACTGGAAAATGTTAAAGAATCACTGCAGGAACTTGTAATGCTACCTCTTCGACGGCCAGACTTGTTTAAGGGGGGTCTCCTTAAGCCATGCAAAGGCATTCTACTTTTTGGACCCCCTGGAACAGGGAAAACAATGCTAGCAAAGGCCCTTGCCACTGAGGCCAATGCCAGCTTTATAAATGTCTCAATGTCTACCATAACTTCAAAGTGGTTTGGAGAAGATGAGAAGAATGTAAGGGCATTGTTCTCTTTGGCTGCAAAAGTTTCCCCTACGATTATTTTCATTGATGAGGTTGACAGCATGTTAGGCCAAAGGTCTAGAGTTGGTGAACACGAGGCAATGAGGAAAATAAAGAACGAGTTTATGGCTCACTGGGATGGTTTGCTATCAAAGACTGCAGAGCGTGTTCTTGTTCTCGCTGCAACTAACAGACCTTTCGATTTGGATGAAGCTATAATCAGACGGTTTCAGCGAAGAATCATGGTTGGACTGCCAAATGCTGAGAGTAGAGAAAGAATTCTAAGGACACTCCTTGCAAAAGAGAAACTTGAGGAAGGCTTTGATTTCAAGGAGCTCGCAACAATGACAGATGGTTATACTGGCAGTGACCTCAAGAATCTATGTACAGCCGCAGCTTTTCGGCCAGTTCGGGATTTTCTGAAGACAGAGCAACAGAAAGAAAAGGCTAAGAAGAAAGAAGAGGAGAAGAAAGAAGAAGAGAAAAAGGAAGAGGCAACGAAAGAAGAGGAGAAAAAAGAAGACATAGGGGAGTCAGAGAACTCTGAACAATCTAGCAAGGAAGAGGAGAAGAacGtgaAGTAA___GAAAGAAGAGGAGAAAAAGGAAGAGGTCGAGGAAACTGTCATTACCCTCAGACCTTTAACAATGGAGGATTTGAAACAAGCAAAGAGTCAGATTTCTCCAAGCTTTGCATCTGAAGGCGTTGGAATGAATGAACTCAAGGAATGGAATGAAATGTATGGAGAGGGTGGAAGCAGGAAAAAACAATCGCCAACTTACTTTTTGTAAGGCACTCAGATTTCATCTTGCGGCCCTAAAGGGAAATTAGCCAGTCCATTGCTTGATTGCCATTTGCAAGTCTGATGAATCTTCTATCTCTGGGAGCACACTCCATTGTCCAGGATTCACAGTTGGAAAACTCCTCAACCGCTGTAAATATGCCTTCAAATCGAATTTCTTTTCCTAGTGTCTGTTGCTTTGACTCTGCTGCTGGCCCAAAGGGAACATCAGTCTTATTCCACACTTAGTGAGGATTAGAGTTATTTGATTATTTCTACAGGGAAGATTTTCTCCCTTGCTCAACCTGAAATCACAGGTGTAATAGCTAGTTTGTATGTTTGTGTCACTGCTTCTGTCAGTGACTAATCTAGAGATATAAGATAGTTAATAATCAGTAGTAGGAGAACTATATTATTAGATTTCTCAGTGTAGTCATTATTTGCAGAGCTTGTATTGCCTGCCTTAAACAAATATATTGCTACTGCAAATGAGTTGTACGTTTTTGTTAGCAGCGAGTGCTATTTCTGCACCC

Fln Alignment:

sp_v1.1_unigene9159___QAGQIDSKDTLQMESNGENPQDPTSGKIEAKMESPSTEKKPEGEKTDSASKGDMPKKEADNTKEGGPAATPKPE----VLPDNDFEKRIRPEVIPAGKIGVTFDDIGALENVKESLQELVMLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGLLSKTAER-------VLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFDFKELATMTDGYTGSDLKNLCTAAAFRPVR
Q9SEX2______________RAGQTGTRKSPQDGAWARGPTTRT-GPASRGGRGGATSKSTAGARSSTAGKKGAASKSNKAESMNGDAEDGKSKRGLYEGPDEDLAAMLERDVLDSTP-GVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQG-IRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDG-VSNTATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMR

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
265			16	83	0.994512
317		83		16	0.994512
388	85			14	0.993533
389			85	14	0.993533
393	85	14			0.993533
399			16	83	0.994512
400	20			80	0.995493
407	20		80		0.995493
408	80		20		0.995493
411		25	75		0.996473
1244	50		50		1.0
1373		7	7	73	1.0
1374	7		92		0.999664
1375		88		11	1.0
1376	7		84	7	0.99801
1377	92		7		0.999664
1378		11		88	1.0
1379		7		92	0.999664
1380	7			92	0.999664
1381		88	11		1.0
1382			11	88	1.0
1384	88		11		1.0
1838	25		75		0.996473
2187	31		68		1.0
2220		13		86	0.999973
2298	35		64		1.0
2415	50	50			1.0
2430	83		16		0.994512
2445	20		80		0.995493
2810	11		88		0.923564
2882	87		12		0.992554
2888	87		12		0.992554
2908	12			87	0.992554
2988		85		14	0.993533
3027	16		83		0.994512
3202		24	75		1.0
3300		20		80	0.995493
3317		75		25	0.996473
3319	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain