SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9157

Length: 1386 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9157

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xenotropic and polytropic murine leukemia virus receptor ids-4, putative n=1 Tax=Ricinus communis RepID=B9SES9_RICCO	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of cellular response to phosphate starvation	GO:0080040	Biological Process	0.0	59%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SPX, N-terminal	IPR004331	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNU0

Fln msg: your sequence is longer than subject: 321 - 238

Fln protein: MKFGRILKSQIEEAPPEWRDQYLSYKKLKKRLKLIFSLKVFQEAEDETPKVVRKRPRIEALGVPECVAERESDSYSFAKRNDSNDCASIGSNQDDDLNDIKDMSAAEFDFIELLNPELEKFNDFVMAKEKEYIIRQKELQERIQRARNTVRPSGKQDLIKVSQDVVKFHGEMVLLESYSILNFTGLVKITKKYDKRTGGILRLAFIQKVLGQPFFTMELLFKLVKQCEETLHNLFSSSEDEGEETEYEEEETEDEAVVDLGQDQIYRSTMAALRSMKEMRRGSSTYGPFSLPPLYHDMPPASSSSIPTSHQSTILSDSSL*

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTATGTGTTTGTGAATTGTCAATTCTAGATTGGATCCAGTTTGTAATTCGCTCCGAGTCCGAATTTCAGACCTCTGTTTCTTTTTCCAAGTGCAGAAACTTCGGTATACTGGGAATGCCAGAGGTGTTTGAATGCAGATGGAAATGATCTTTTAAATACAGTTGGAAATACAAAATTTTCTACGACGGAAATGCTTTAAGCTAACCATCAAA_-_ATGAAATTCGGAAGAATTCTGAAGAGCCAGATCGAAGAAGCTCCACCTGAATGGCGAGACCAATATCTGTCTTACAAAAAACTCAAGAAACGTCTGAAGTTAATTTTTTCTTTAAAAGTATTTCAGGAAGCCGAAGACGAGACGCCAAAAGTAGTCCGTAAGAGGCCAAGGATCGAAGCGCTGGGAGTTCCAGAGTGTGTAGCCGAAAGAGAAAGTGATTCTTATTCTTTCGCTAAAAGAAATGATTCAAACGACTGTGCAAGCATTGGCTCGAATCAAGACGATGATCTTAATGATATCAAAGACATGTCTGCGGCAGAATTCGATTTCATAGAGCTGCTAAATCCGGAGCTTGAGAAGTTTAATGATTTCGTCATGGCTAAGGAAAAGGAGTACATCATCCGTCAAAAGGAATTGCAGGAGAGGATTCAAAGGGCGAGGAATACTGTCCGTCCGAGCGGCAAGCAAGATTTGATCAAAGTCAGCCAGGACGTTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAGTTACAGCATTTTGAATTTCACCGGTTTGGTAAAAATAACAAAGAAATACGATAAAAGAACCGGCGGAATCCTGCGTCTGGCGTTCATTCAGAAGGTTTTAGGGCAGCCGTTTTTCACCATGGAACTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACCCTTCATAACCTATTTTCCTCTTCAGAGGACGAGGGAGAAGAAACAGAGTACGAGGAAGAAGAAACAGAGGACGAAGCGGTGGTGGATCTGGGGCAAGACCAGATATACAGAAGCACCATGGCCGCCCTTCGCAGCATGAAAGAAATGCGCAGAGGCAGTTCTACTTACGGCCCCTTCTCGCTTCCTCCACTGTATCACGATATGCCCCCGGCGTCCTCCTCATCGATCCCAACAAGTCACCAATCGACAATTCTCTCGGATAGTTCATTGTAG___ACATTTTACTCTCGTCATGAATGCCCCTATTTGATCCTTGTGTGTGGGGTTTATTTAAATTTCATGCGGAGAGTAAAAATAGGACAAAGATTTGAGAAATTAAGCTTATTTCAATATTTCTCAAAATCATTCTAAGAGTGTTAGTATTAAGTTTAGCTGTAAATATATTTGGATGGGTTAAAAGG

Fln Alignment:

sp_v1.1_unigene9157___MAKEKEYIIRQKELQERIQRARNTVRPSG--------KQDLIKVSQDVVKFHGEMVLLESYSILNFTGLVKITKKYDKRTGGILRLAFIQKVLGQPFFTMELLFKLVKQCEETLHNLF-----------------------SSSXXXXXXXXXXXXXXXXXAVVDLGQ--------------------DQIYRSTMAALRSMKEMRRGSSTYGPFSLPPL
B8LNU0______________MEQEEEYIIRQKELQDRIEKLKSNSRQNATVFSQTEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGLAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLISECENTLQSLFPDYPKSLLQVPAGPSSNGNQAEASSSAGNSDLQRLREPPPAATTQAEFGEENSPLKGKGDEDGDRDAEGMESIYRSTMAALRTMREIRRGSSTYSVFSLPPL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
38			60	40	1.0
42	83		16		0.994512
44		16		83	0.994512
45		16	83		0.994512
163	85			14	0.993533
690		40	60		1.0
777	87			12	0.992554
799		12		87	0.992554
853			10	90	0.90298
855	90	10			0.90298
858		90	10		0.90298
861	90	10			0.90298
862	90			10	0.90298
864			90	10	0.90298
865		10		90	0.90298
866	10			90	0.90298
867		10		90	0.90298
869	90	10			0.90298
870	10		90		0.90298
872			90	10	0.90298
950			10	90	0.90298
951			10	90	0.90298
1174		66		33	0.997452
1284	12		87		0.992554
1359		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain