SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9154

Length: 1462 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9154

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding / zinc ion binding	-	-	2.0e-33	46%
FL-Next	tr=Putative uncharacterized protein Sb04g022820; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	50%
Blast2go	zinc finger family protein	-	-	5.97563e-40	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	5.97563e-40	64%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	5.97563e-40	64%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	5.97563e-40	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C5XUU4

Fln msg:

Fln protein: MTDKSSSCSSHCQPPLPELKLYQAFIFSIPILFYACSSVDPFYMLYLRRRRNAWAAAHMMVQYEARGFTSEPTECGLKKEFRDMLPTVVFNENVLIEDTQCAVCLGDYQINEKLQQLPVCGHTFHMECIDKWFANNTTCPLCRTSLLQAAKVVPLDSPAHIATPLQIDELPQVSFAQQVHPIQDMPSEESPQMEEESSSIDDRFSEEINTTRLDMHEAHIYVTDPQEVHSTGNADAVICAVC*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTCTTCATTTCCACCCGGTATCTTTCCTTTCCGTACATTTTTCTGCAATTGCTTTTGTGGGTATAAGGGGAGGCTGATTACTTTGATGCCCAGTTAGACAGAGCCTGGTAATACTTATTCAGAGCCCCAGAGATCTGCAAAACCATGGACGGACATTAAGGTCTAAGTTCATCGTATGTATTTGTCCATGGTGATCATTAAACATTACTGGCACCCAGCGTTTGCCAGTTAAAGCCACCCCAGCAATGTCGGCATTTAGTTTGGAGTTCTGATGATGGTAGGGCGGTGTTGGGGTCATCTATTCAGATTGATTATACCCACATTTGATCGGTAAGTTGTAGTGGCGTTTTAGATTATTAGGTGTGGGATCAGATCACGCCATATTTGGAGTAAAA_-_ATGACCGATAAATCTTCCTCATGTTCTTCACATTGCCAGCCACCTCTCCCCGAGCTTAAGCTGTACCAAGCATTCATATTTTCGATACCTATTCTTTTCTACGCTTGTTCTTCTGTTGACCCTTTCTATATGCTTTACTTGCGGAGGAGGAGAAATGCATGGGCAGCTGCACATATGATGGTTCAATATGAAGCTAGAGGATTCACCTCAGAGCCCACCGAATGCGGTTTGAAGAAGGAATTCAGAGATATGCTACCTACAGTGGTCTTCAATGAAAACGTTTTAATAGAAGACACACAATGTGCTGTGTGTCTTGGGGATTACCAGATAAATGAAAAGCTACAGCAACTACCTGTCTGTGGGCATACCTTTCACATGGAATGCATTGACAAGTGGTTTGCAAACAATACCACATGTCCACTTTGTCGGACTTCACTCCTCCAGGCTGCTAAGGTTGTTCCTTTGGATTCACCAGCACATATTGCAACACCTCTGCAGATTGATGAACTTCCCCAAGTTTCATTTGCACAGCAAGTTCATCCCATTCAAGACATGCCTTCTGAAGAAAGCCCTCAGATGGAGGAGGAGAGTAGCTCTATTGATGACAGATTCTCAGAGGAAATAAATACCACCCGTTTAGATATGCATGAAGCTCATATTTATGTGACAGATCCACAGGAGGTACACTCGACAGGCAATGCAGATGCTGTCATATGTGCAGTTTGCTGA___AACGTGATTCTGAAGGTGGTGGTTGGCCTTTTCCCTCTTTTACCCTTGTCTTATGTCCTGTGCTGCTATAATCTATGAGAGATTATCGTACATGGTTAGAAAGTTGAAAATTTATCACTACTGTTGGAAAGTACAGACCATCTAACACTGAAAATGTTATTTGTTAACATAGCATGACCAGAAAACGAGATTAGATATGTTGCTTCAAAAAATTGTGCATTGGAATATTTTGTTGGAAGTTAGAAAAATAAGGCACATGTAGAATTCAGTTCTCTTCTTGTTGTACATTATATCAAGTTATACTTTTCCAG

Fln Alignment:

sp_v1.1_unigene9154___SCSS-----HCQPPLPELKLYQAFIFSIPILFYACSSVDPFYMLYLRRRRNAWAAAHMMVQYEARGFTSEPTECGLKKEFRDMLPTVVFNENVLIEDTQCAVCLGDYQINEKLQQLPVCGHTFHMECIDKWFANNTTCPLCRTSLLQAAKVVPLDSPAHIATPLQ
C5XUU4______________SCTSPDPPDYCSAESPELKLYQAFIFSVPV-FFTFVLLLFFYLFYLRRRRANWQSLRMRTNNLIRGDNAR-LECGLKKEMREMLPVVIFKESFLIRETQCSVCLADYQPDERLQKIPPCGHTFHISCIDHWLSTNTTCPLCRVSLLPAPKATSIDLDLEAQTAVE

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
206		44		55	1.0
268	50		50		1.0
326		14		85	0.993533
380		14	14	71	0.984337
381		14	14	71	0.984337
387			28	71	1.0
389			28	14	1.0
391		28		71	1.0
396		33		66	1.0
397		33	66		1.0
436			75	25	0.996473
437	75			25	0.996473
438		25		75	0.996473
439	75		25		0.996473
440	75	25			0.996473
442			25	75	0.996473
445			25	75	0.996473
446	25	75			0.996473
447		75	25		0.996473
449		75	25		0.996473
451		25		75	0.996473
454			25	75	0.996473
455		25		75	0.996473
1125	11	88			0.923564
1161		87		12	0.992554
1266	55	44			1.0
1371	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain