SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9152

Length: 2119 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9152
ATGGGGACAGCTTCTGTCACAGCCGGACGATATTTGCAGGGGCCAGATTTGTTTCACATTAAACGAGCTGGTATATCACAGGCAGGCGTCTCATCCTTCTGAAGGAGAAGTATCCGGGCAAATCACTCCTGTCAGACATAGCTAGGACAATGGTGACATTAGAGGTTGAACATGTGATGGAAGCTGTTTCTAATGCACATTTTTCTGGACTGCGCCTGGATGAGGCTTCTTTGCAAGTTTCCAAAGTGAAGGATTTAAACAGACAACCATTTGTTATTGGTGTTGCGGGTGGTACGGCTTCTGGAAAACTACAGTTTGTGATATGATCATTCAGCAGCTTCATGATCATCGTGTCATTCTTGTTCATCAAGACTCGTTCTATCGTGGTTTAACCCCAGAGGAATTGGAACATGTGCAAGAGTACAATTTTGATCACCCAGATGCCTTTGACACTGAACAACTTCTTGACTGTATCAATCAGTTGAAGCAGAGTGAATCTGTGCATATTCCTATTTATGATTTCAAGCATCATCGTCGTAGTACAGATGCCTTTCGCAAGGTGAATCCATCAGATGTCATTATTTTAGAGGGAATTTTAGTATTTCATGATCCTCGTGTCCGGGAAATGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGAGGATAAGACGTGACACAGTTGAGAGAGGTAGAGATGTGAATTCTGTTCTTGAGCAGTATGCCAAGTTCGTTAAGCCAGCTTTTGATGATTTTGTACTACCATCAAAAAAGTATGCTGATGTTATTATCCCCCGAGGGGGAGACAACCATGTTGCAATAAATCTTATTGTGCAACACATTCAGACGAAGCTTGGACAACATGACCTGTGCAAAATTTATCCCAATGTTTATGTCATCCAATCTACTTTCCAGATTCGCGGGATGCATACACTCATACGAGATCGTGAGACCACAAAGCACGATTTTGTCTTTTATTCAGATCGGCTCATTCGACTGGTAGTTGTTGAGAATGGCCTGGGCCATCTTCCATTCACTGAAAAGCAAGTTACCACTCCTACAGGATCAGTCTACACTGGAGTTGATTTCTGCAAAAAGCTGTGTGGAGTGTCAATTATCCGAAGTGGGGAAAGCATGGAGAATGCATTGCGTGCATGTTGTAAAGGTATCAAAATTGGGAAAATTTTAATTCACCGTGATGGAGATAATGGTAAACAGCTGATTTATGAGAAATTACCAAATGATATTTCTGAACGCCATGTTTTGCTCCTTGATCCAGTTCTAGCAACAGGAAACTCTGCTGGGCAGGCTATTGAACTGTTATTACAGAAAGGGGTGCCAGAATCACATATCATATTCCTCAATCTCATCTCTGCTCCTGAAGGAATCCACATGGTCTGTAAACGGTTTCCAAGGCTGAAAATTGTAACATCTGAGATAGATGTATCTTTAAATGAAGAATTCCGTGTAGTTCCTGGGATGGGTGAATTTGGTGATCGCTATTTTGGGACAGATGACGACCCCCCTGCTCCAACATCTGAAAATGCCTATAGGATACAGCAGAATCCCAAGGTATAAATAACGAGTGTTCGGACCCAAATTCCGCCTTTGCAATATTTTTCCAGATGAAAAAATTTGAGCTAAGCTTAGCAGTGGCTGTCAGGGCAACGGGTCACATTTTTTATGATAATATTGGTTGTGTAATAGAGTCCCTGGCCACGTGCAAGTGAAAATTAGTGATTCTTTATTTGTATCAACAATTATGACTTTTTGGACACTGATTCTTCTCAAGCTTTGCCAATTTGACTAGAATGAAGACCTCCAGTAGACAATTGCAACCATTGATCAGACGCTAAGACAAATTTTTATAAAAGTGGTCATGTCACGTTGAGTTCCAAAGGCTTTGTGTATATGAGTGGAAGAACAGCACCTTTTATGTTCTAATAAGTTCTTTTCTGTATGTAGTATTTATCATGTAAGAAATGAAGGAATATCATTTGAAGAATGTGCCCTAAGATTTCATGATAGACCTTCCAATATTATTTCTTCAAATAACCAATTACCAAAGTAAACACATCTAAAATGTCCTTAAATCGGACAAAA

Ace file of the UniGene sp_v1.1_unigene9152

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Uracil phosphoribosyltransferase, putative (EC:2.4.2.9 2.7.1.48); K00876 uridine kinase [EC:2.7.1.48]	-	-	86%
FL-Next	sp=Phosphoribulokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	protein	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Uridine kinase.	EC:2.7.1.48	-	0.0	92%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		92%
Blast2go	Drug metabolism - other enzymes	00983		92%
Blast2go	Metabolic pathways	01100		92%
Blast2go	Uracil phosphoribosyltransferase.	EC:2.4.2.9	-	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	92%
Blast2go	Metabolic pathways	01100		0.0	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	Uridine kinase.	EC:2.7.1.48	-	0.0	86%

Source	KEGGs	Term	Identity
AutoFact	Pyrimidine metabolism	00240	86%
AutoFact	Drug metabolism - other enzymes	00983	86%
AutoFact	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	92%
Blast2go	uridine kinase activity	GO:0004849	Molecular Function	92%
Blast2go	uracil phosphoribosyltransferase activity	GO:0004845	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC2

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MIIQQLHDHRVILVHQDSFYRGLTPEELEHVQEYNFDHPDAFDTEQLLDCINQLKQSESVHIPIYDFKHHRRSTDAFRKVNPSDVIILEGILVFHDPRVREMMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAINLIVQHIQTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRETTKHDFVFYSDRLIRLVVVENGLGHLPFTEKQVTTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSAGQAIELLLQKGVPESHIIFLNLISAPEGIHMVCKRFPRLKIVTSEIDVSLNEEFRVVPGMGEFGDRYFGTDDDPPAPTSENAYRIQQNPKV*

Protein Length: 425

Fln nts: ATGGGGACAGCTTCTGTCACAGCCGGACGATATTTGCAGGGGCCAGATTTGTTTCACATTAAACGAGCTGGTATATCACAGGCAGGCGTCTCATCCTTCTGAAGGAGAAGTATCCGGGCAAATCACTCCTGTCAGACATAGCTAGGACAATGGTGACATTAGAGGTTGAACATGTGATGGAAGCTGTTTCTAATGCACATTTTTCTGGACTGCGCCTGGATGAGGCTTCTTTGCAAGTTTCCAAAGTGAAGGATTTAAACAGACAACCATTTGTTATTGGTGTTGCGGGTGGTACGGCTTCTGGAAAACTACAGTTTGTGAT_-_ATGATCATTCAGCAGCTTCATGATCATCGTGTCATTCTTGTTCATCAAGACTCGTTCTATCGTGGTTTAACCCCAGAGGAATTGGAACATGTGCAAGAGTACAATTTTGATCACCCAGATGCCTTTGACACTGAACAACTTCTTGACTGTATCAATCAGTTGAAGCAGAGTGAATCTGTGCATATTCCTATTTATGATTTCAAGCATCATCGTCGTAGTACAGATGCCTTTCGCAAGGTGAATCCATCAGATGTCATTATTTTAGAGGGAATTTTAGTATTTCATGATCCTCGTGTCCGGGAAATGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTAAGGCTGGCTAGGAGGATAAGACGTGACACAGTTGAGAGAGGTAGAGATGTGAATTCTGTTCTTGAGCAGTATGCCAAGTTCGTTAAGCCAGCTTTTGATGATTTTGTACTACCATCAAAAAAGTATGCTGATGTTATTATCCCCCGAGGGGGAGACAACCATGTTGCAATAAATCTTATTGTGCAACACATTCAGACGAAGCTTGGACAACATGACCTGTGCAAAATTTATCCCAATGTTTATGTCATCCAATCTACTTTCCAGATTCGCGGGATGCATACACTCATACGAGATCGTGAGACCACAAAGCACGATTTTGTCTTTTATTCAGATCGGCTCATTCGACTGGTAGTTGTTGAGAATGGCCTGGGCCATCTTCCATTCACTGAAAAGCAAGTTACCACTCCTACAGGATCAGTCTACACTGGAGTTGATTTCTGCAAAAAGCTGTGTGGAGTGTCAATTATCCGAAGTGGGGAAAGCATGGAGAATGCATTGCGTGCATGTTGTAAAGGTATCAAAATTGGGAAAATTTTAATTCACCGTGATGGAGATAATGGTAAACAGCTGATTTATGAGAAATTACCAAATGATATTTCTGAACGCCATGTTTTGCTCCTTGATCCAGTTCTAGCAACAGGAAACTCTGCTGGGCAGGCTATTGAACTGTTATTACAGAAAGGGGTGCCAGAATCACATATCATATTCCTCAATCTCATCTCTGCTCCTGAAGGAATCCACATGGTCTGTAAACGGTTTCCAAGGCTGAAAATTGTAACATCTGAGATAGATGTATCTTTAAATGAAGAATTCCGTGTAGTTCCTGGGATGGGTGAATTTGGTGATCGCTATTTTGGGACAGATGACGACCCCCCTGCTCCAACATCTGAAAATGCCTATAGGATACAGCAGAATCCCAAGGTATAAATAACGAGTGTTCGGACCCAAATTCCGCCTTTGCAATATTTTTCCAGATGAAAAAATTTGAGCTAAGCTTAGCAGTGGCTGTCAGGGCAACGGGTCACATTTTTTATGATAATATTGGTTGTGTAATAGAGTCCCTGGCCACGTGCAAGTGAAAATTAGTGATTCTTTATTTGTATCAACAATTATGACTTTTTGGACACTGATTCTTCTCAAGCTTTGCCAATTTGACTAGAATGAAGACCTCCAGTAGACAATTGCAACCATTGATCAGACGCTAAGACAAATTTTTATAAAAGTGGTCATGTCACGTTGAGTTCCAAAGGCTTTGTGTATATGAGTGGAAGAACAGCACCTTTTATGTTCTAATAAGTTCTTTTCTGTATGTAGTATTTATCATGTAAGAAATGAAGGAATATCATTTGAAGAATGTGCCCTAAGATTTCATGATAGACCTTCCAATATTATTTCTTCAAATAACCAATTACCAAAGTAAACACATCTAAAATGTCCTTAAATCGGACAAAA

Fln Alignment:

sp_v1.1_unigene9152___PDAFDTEQLLDCINQLKQSESVHIPIYDFKHHRRSTDAFRKVNPSDVIILEGILVFHDPRVREMMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYAKFVKPAFDDFVLPSKKYADVII
A9NVC2______________PRANNFDLMYEQVKALKEGKSVMKPIYN--HVTGILDPAEQINPPKILVIEGLHPMFDARVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESI-KASIQARKPDFDAFIDPQKQYADVVI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
286		80		20	0.995493
446		75		25	0.996473
597		10		90	0.90298
598	10			90	0.90298
658	87		12		0.992554
682	87		12		0.992554
708	87		12		0.992554
887			20	80	0.995493
890			80	20	0.995493
892	80		20		0.995493
893	80	20			0.995493
895	80		20		0.995493
897			20	80	0.995493
898	20			80	0.995493
899	85		14		0.993533
901		85	14		0.993533
902	14	85			0.993533
906			14	85	0.993533
908		14		85	0.993533
909		14		85	0.993533
972		50		50	1.0
1139			83	16	0.994512
1140			16	83	0.994512
1316	14	85			0.993533
1660	81	18			0.999994
1663			18	81	0.999994
1665	81		18		0.999994
1666	18		81		0.999994
1668	81	18			0.999994
1669			81	18	0.999994
1869		90		10	0.90298
1876	88			11	0.923564
1957		88		11	0.923564
2023	16		83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain