SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9125

Length: 2183 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9125
ATGGGATGTCCGCATGGAATTGCAGTTAAGATGGATCCATCCTCTTCGTGTCGTTGGCTGTTATTTTACTTGACGCGGACCATTTCAAAGTTTCTCTGGGCCTTTGGGAGCTTAAATAAGCCTTCCTAGGTACTCTAGGATTGAATATAATATACTCGCTCGTCCATGGAACCAACTGCTACCCTAGGATTGAAGATAACATGCTCGTCCATGGAACCAACTGCTACCCTAGGGTTGAATATAACATACTCGCTCGTCCATGGAACCAACTGCTCCACAAGGTACAGAGTGTGTGGAAAATAGTAACGGTGTTAACCGAGGGCGAGATCAGATACCGGTCAGGACAAAGGCCAAATTATACAGACAATAGTGTTAACAAATATTAGTTAAGATTTGGATTGTGTTTGATTAAAGATGAAATGGTCCATACACAGGCTTTTGTCTCCTTTAATGTACGTGTATCGTGCCAGAGTCAGTTCTTTGGTTTTGGAGGGAGAATTAAATTGATCGACCAGACTCAGATTGTTCCTTCAAACCCTGAAGGTTGGTTTTGAATATTCGTTGTCCTAGGTGCTTGTCACACAGGTTCAACTTTAGGACTTAACCATGGGGACATATCTAAGTTGCCCAAAGACAGACAAGGTGTCAGAAGATGGAGAAAATTGCCAAATCAAATATGGTGCATCAAATATGCAAGGGTGGCGTGCCAGTATGGAAGATGCGCATGCAGCAGTTCTTGATTTTGATAGTTGCACATCGTTCTTTGGGGTCTATGATGGCCATGGAGGTAAAGTTGTTGCCAAGTTTTGTGCCAAATATCTTCATCAAGTTGTAAAGTCGGAAGCTGATAAAAATGGTGATTTATGTGAAAGCCTTCAAACAGCATTTCTGAGGATGGATGAGATGATGAAGGGTCAAAGAGGGCGGAGGGAGTTAGCTATATTAGGGGATAAACAAAGTAGAGATACTACTTTGTTGGATCGAAATACATGGTCAACTCCAAGGGAAGTGGAAATTAGAACTGAAGTTGAGGATGATGACTGGACATCTGAGGAAGCCCATGAAGATTTTTCAGGACCAACCTCTGGAAGCACAGCATGTGTTTCACTTATACAGAAGAACAAACTTATTGTGGCAAATGCTGGGGATTCCCGTTGTGTCCTTTCAAGAAAGGGTCAGGCTTTCAATCTGTCAAGGGATCATAAACCAGATCTTGAAAAGGAAAGGGAGAGAATTATTCAAGCTGGAGGCTTTATTCATGCTGGGCGTGTGAACGGAAGTTTGAATCTGGCAAGGGCTATTGGAGATATGGAGTTGAAGCAGAATAAGTTCCTACCTCCTGAAAAGCAAATCATAACTGCTTGTCCAGAAATAAATGTTGTGGAACTTTGTGAAGATGATGAGTTTCTTGTCCTGGCATGCGATGGGGTGTGGGATGTCATGTCGAGCCAAGAGGTTGTCAACTTCATACATGAACATATTGATGTTGAGAAGAATCTTTCAGCAGTGTGCGAAAAGGTTCTTGACAAATGTCTTGCTCCAAGTACAGCTTTAGGTGAAGGTTGTGACAACATGACCATTATTGTAGTGCAGCTCCAGCACAGACATTGAAATAGATGTTATAGCTTGATCTGCACTTGAATTTAGTACTCTTCCACTGCTTCTGTAAAAGTATACTCACATTTCTTCGTAACCTTTTAGGTCATATTATACATGCACATGCATATTGATAGCATGGTATGGTGCCAAAACAATTTCATTTTGTCAAAGCATTCTGCTCATTAGCAGGTTATACTGGATTGTATTGTTAATTCAGAACAATGACCAGCATTAGAAGAATGCTTCTTGCTGCAGAAGTACGCTGGCTATCTGGTCAAAACAAAGCATTCTACGAAATTGTAAAAGTGTGTTATTGGTTGCATTGAATACGTACCCCCATGTCTATAAACTTTAGATTTATGTACAGAGTCTTCAAGTGTCTGAGGTTAAACTTGAATGCAAACTGCATTTCAAAAGTTTCCAGTGTAGACTCACCCTCCAGGCCTAGAGTTTTTCGAAGAACTATTAATGCTGCCTATTTTCTCAGGTGATGATATTTGTTGTCCTGGCGAGAGTAAGCTTCTCATATGTACATAAACTCTGCAGTTGTGAAAAGAGTAATTAACATAACATACATTAGCCAC

Ace file of the UniGene sp_v1.1_unigene9125

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein phosphatase	-	-	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	83%
Blast2go	Protein phosphatase 2C-like	IPR001932	-	83%
Blast2go	Protein phosphatase 2C	IPR015655	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNL4

Fln msg:

Fln protein: MGTYLSCPKTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVAKFCAKYLHQVVKSEADKNGDLCESLQTAFLRMDEMMKGQRGRRELAILGDKQSRDTTLLDRNTWSTPREVEIRTEVEDDDWTSEEAHEDFSGPTSGSTACVSLIQKNKLIVANAGDSRCVLSRKGQAFNLSRDHKPDLEKERERIIQAGGFIHAGRVNGSLNLARAIGDMELKQNKFLPPEKQIITACPEINVVELCEDDEFLVLACDGVWDVMSSQEVVNFIHEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQLQHRH*

Protein Length: 336

Fln nts: ATGGGATGTCCGCATGGAATTGCAGTTAAGATGGATCCATCCTCTTCGTGTCGTTGGCTGTTATTTTACTTGACGCGGACCATTTCAAAGTTTCTCTGGGCCTTTGGGAGCTTAAATAAGCCTTCCTAGGTACTCTAGGATTGAATATAATATACTCGCTCGTCCATGGAACCAACTGCTACCCTAGGATTGAAGATAACATGCTCGTCCATGGAACCAACTGCTACCCTAGGGTTGAATATAACATACTCGCTCGTCCATGGAACCAACTGCTCCACAAGGTACAGAGTGTGTGGAAAATAGTAACGGTGTTAACCGAGGGCGAGATCAGATACCGGTCAGGACAAAGGCCAAATTATACAGACAATAGTGTTAACAAATATTAGTTAAGATTTGGATTGTGTTTGATTAAAGATGAAATGGTCCATACACAGGCTTTTGTCTCCTTTAATGTACGTGTATCGTGCCAGAGTCAGTTCTTTGGTTTTGGAGGGAGAATTAAATTGATCGACCAGACTCAGATTGTTCCTTCAAACCCTGAAGGTTGGTTTTGAATATTCGTTGTCCTAGGTGCTTGTCACACAGGTTCAACTTTAGGACTTAACC_-_ATGGGGACATATCTAAGTTGCCCAAAGACAGACAAGGTGTCAGAAGATGGAGAAAATTGCCAAATCAAATATGGTGCATCAAATATGCAAGGGTGGCGTGCCAGTATGGAAGATGCGCATGCAGCAGTTCTTGATTTTGATAGTTGCACATCGTTCTTTGGGGTCTATGATGGCCATGGAGGTAAAGTTGTTGCCAAGTTTTGTGCCAAATATCTTCATCAAGTTGTAAAGTCGGAAGCTGATAAAAATGGTGATTTATGTGAAAGCCTTCAAACAGCATTTCTGAGGATGGATGAGATGATGAAGGGTCAAAGAGGGCGGAGGGAGTTAGCTATATTAGGGGATAAACAAAGTAGAGATACTACTTTGTTGGATCGAAATACATGGTCAACTCCAAGGGAAGTGGAAATTAGAACTGAAGTTGAGGATGATGACTGGACATCTGAGGAAGCCCATGAAGATTTTTCAGGACCAACCTCTGGAAGCACAGCATGTGTTTCACTTATACAGAAGAACAAACTTATTGTGGCAAATGCTGGGGATTCCCGTTGTGTCCTTTCAAGAAAGGGTCAGGCTTTCAATCTGTCAAGGGATCATAAACCAGATCTTGAAAAGGAAAGGGAGAGAATTATTCAAGCTGGAGGCTTTATTCATGCTGGGCGTGTGAACGGAAGTTTGAATCTGGCAAGGGCTATTGGAGATATGGAGTTGAAGCAGAATAAGTTCCTACCTCCTGAAAAGCAAATCATAACTGCTTGTCCAGAAATAAATGTTGTGGAACTTTGTGAAGATGATGAGTTTCTTGTCCTGGCATGCGATGGGGTGTGGGATGTCATGTCGAGCCAAGAGGTTGTCAACTTCATACATGAACATATTGATGTTGAGAAGAATCTTTCAGCAGTGTGCGAAAAGGTTCTTGACAAATGTCTTGCTCCAAGTACAGCTTTAGGTGAAGGTTGTGACAACATGACCATTATTGTAGTGCAGCTCCAGCACAGACATTGA___AATAGATGTTATAGCTTGATCTGCACTTGAATTTAGTACTCTTCCACTGCTTCTGTAAAAGTATACTCACATTTCTTCGTAACCTTTTAGGTCATATTATACATGCACATGCATATTGATAGCATGGTATGGTGCCAAAACAATTTCATTTTGTCAAAGCATTCTGCTCATTAGCAGGTTATACTGGATTGTATTGTTAATTCAGAACAATGACCAGCATTAGAAGAATGCTTCTTGCTGCAGAAGTACGCTGGCTATCTGGTCAAAACAAAGCATTCTACGAAATTGTAAAAGTGTGTTATTGGTTGCATTGAATACGTACCCCCATGTCTATAAACTTTAGATTTATGTACAGAGTCTTCAAGTGTCTGAGGTTAAACTTGAATGCAAACTGCATTTCAAAAGTTTCCAGTGTAGACTCACCCTCCAGGCCTAGAGTTTTTCGAAGAACTATTAATGCTGCCTATTTTCTCAGGTGATGATATTTGTTGTCCTGGCGAGAGTAAGCTTCTCATATGTACATAAACTCTGCAGTTGTGAAAAGAGTAATTAACATAACATACATTAGCCAC

Fln Alignment:

sp_v1.1_unigene9125___MGTYLSCPKTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVAKFCAKYLHQVVKSEADKNGDLCESLQTAFLRMDEMMKGQRGRRELAILGDKQSRDTTLLDRNTWSTPREVEIRTEVEDDDWTSEEAHEDFSGPTSGSTACVSLIQKNKLIVANAGDSRCVLSRKGQAFNLSRDHKPDLEKERERIIQAGGFIHAGRVNGSLNLARAIGDMELKQNKFLPPEKQIITACPEINVVELCEDDEFLVLACDGVWDVMSSQEVVNFIHEHIDVEKNLSAVCEKVLDKCLAPSTALGEGCDNMTIIVVQLQ
A9NNL4______________MGTYLSCPKTDKVSEDGENGQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVARFCAKYLHHVVKSEADRNGDLCESLQTAFLRMDEMMKGQRGQRELAILGDKENKDTTS-DGITRSTPRNVEIRNEVEDDDWTSDEAHEDFSGPTSGSTACVSLIQKNKLIVANAGDSRCVLSRKGQAYNLSRDHKPDLENEKERIIQAGGFIHAGRVNGSLNLARAIGDMELKQNKFLPPEKQIITACPDINVVELCEDDEFLVLACDGVWDVMSSQEAVDFIREHINVEKNLSAVCEKVLDKCLAPNTTLGEGCDNMTIIVVQLK

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
65		33		66	0.997452
67		33		66	0.997452
116			14	85	0.993533
119	85	14			0.993533
120	85		14		0.993533
122	85		14		0.993533
129		85	14		0.993533
133		42	57		1.0
134			85	14	0.993533
135		14		85	0.993533
238	42		57		1.0
330	11		88		0.923564
373	88		11		0.923564
375			11	88	0.923564
475	70	30			1.0
1554	20	80			0.995493
1556			20	80	0.995493
1557			20	80	0.995493
1558	80		20		0.995493
1573		66	16		0.988813
1574	83		16		0.994512
1575	83		16		0.994512
1617	83		16		0.994512
1632		16		83	0.994512
1705		7	92		0.999532
1709	93		6		0.999453
1712		6		93	0.999453
1713		6		93	0.999453
1714	93			6	0.999453
1716	93		6		0.999453
1717		93	6		0.999453
1718	93	6			0.999453
1726		6	93		0.999453
1727	6	89			0.998304
2055		11		66	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain