SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9098

Length: 2943 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9098
ATGGGGCCACTCAAGTCCATATGGGCTCGGCAGAGGACGGAGCAGGGATATATTCAATGAATATATCCCCTCTCGGGAAGCTTGGATCCGGCGAGTTATGCGCGTCGGGTTCCTGTTCCTTGCAGAGGCGGATTGATTTCCCGTCATCAGACGAAGCACATATGCCTCTGGACTGATATGCCGATCTACTGACTGGAATTAGGTATGAGAAATTAACCGAATATTCCACGAAGCGTCCCGGGGCCCCGTAGAAGATTCCATCCCCGGACGCTGCACGACTTCGGGAATTACAAAGTCTTTTTCGTCAGTCAAATTGCGGAAGTAGATCTCACGCGTGGACTTGAAGGAGGGAATATATGTTCCCCAGTCTGTCTGTTTGTCTATTGCTCTGAAGAAAGAAAGCAGACAAGCAATTCTGTGAGTTAATTCAGCTGAGAAGAGATTCAGAAAATATTTGCCTTCCAGTGAAATAAAGATACAGGGTCCAATTTTCATGGTTGTGAATTAGTGATATAAGGTTTGATCGGCCCTACGATTTAAATTTCCGAGCGAATATGAGTTCTCTTGGTTGTGTGCGGTGACTGGAGTATGTAGGGTTTGATCGGCCCTACGATTTCAATTTCCGAACAAGTTTATTATTATTTTTTTCTGGTAGTTCGTATTGAATTAAAGATACGAGGTTTGATCGGCCCCATATTTCATCTTCTTGGCAAATTTTGAGCATATCTCGTGAATTAAAGACATGGGCCCTAGGATTTGAATTTCCGAGCCAATTAAGTCTTTTCTGGGCTGTCTGTAGTTAATTAAAGGTGCATGGATTGATCCGTCCGGGAGATTAATTTCTGAGGATATTTGAGCATTTCTGGCTGTCTGGTGAAGTAAATAGATAGGGTTTGATCAACCAGAGGATTTCAATTTCCGAGCAAATCTGAAGCATTTCTTGTTGCAAGTCGTCGCAATTTCCGTAATTGCAAGCATCGAAGCTCGAAAATTCATGTCGGGCGCTGGCCAGGCCGTTGACCTTGCTCCCTTCTCCAAAATGGAATCTATGCCAAAGACACAGCGGGATAATCGTCGGGCCGAATGTTGCAATCCTGTGAGAAATACAGGCGAGGTGTCCTTAGAGCATGTTATGTTAGCTTTGAGGGAGACGAAAGAGGAGAGGGAATTGAGGATCCGGAGTCTGTTTAATTTCTTTGATGCAATGAACAGTGGGCACCTTGACAATTCGCAAATTGAGAGGGGTCTACAGGCATTGCGGATACCGGCCGAATACAAGTATGCCAAGGATCTGCTTCAAGTTTGCGATTCTAATCAGGATGGCCGTGTCGAGTACCAGGAGTTTCGGCGGTATATGGATGACAAGGAACTCGAGCTTTACCGCATTTTTCAGGCGATAGATGTGGAACACAATGGCTGCATTTTACCTGAAGAGCTATGGGAAGCACTCGTTAGAGCAGGCATTGAAATGAGTGATGAAGAACTTGCGCGTTTCGTGGAGCACATAGATAAGGATAATAATGGAATCATAACATTTGAAGAGTGGCGGGATTTTCTCCTTTTATATCCACATGAGGCAACCATAGAAAACATATATAGGTATTGGGAAAGGGTTTGCCCCATAGATATTGGGGAGCAAGCAGTTATTCCTGAAGGTATTGACAGGCACACACATGCATCCAATTATCTTATTGCTGGAGGGGTTGCTGGTGCTTTGTCTCGAACTGCTACAGCTCCTCTTGACCGTTTGAAGGTGATATTGCAGGTGCAGACATCAGGAGCTCATGTTATTCCAGCTATTAGTAATATTTTTAGAGAAGGTGGTCTTAAAGGATTTTTCAGAGGGAATGGAATTAATGTTCTGAAAGTAGCTCCTGAATCTGCAATCAAGTTTTTTGCTTATGAAATGATGAAAGATTTTGTTGTTAACATAACTGGAGAAGAAAAGGAAGATATTGGAACTCTTGGCCGCCTTTTTGCTGGTGGGACAGCTGGTGCAGTAGCCCAGGCCATTGTTTACCCAATGGATTTAGTAAAAACGCGTTTGCAAGTATATGCATGTGAGGGTGGAAAAGTTCCGAAGCTGTCAAATTTGGCAAAGGACATATGGGTTCATGAAGGTCCTCGAGCGCTTTACAGAGGGCTTCTTCCATCTTTACTTGGGATGATACCATATGCAGGCATTGATCTTGCTGCTTATGAGACTTTTAAAGACATGTCAAGACAGTATATCCTCAAAGGCGAAGACCCAGGTCCTGTTGTGCAACTAGGATGTGGAACAGTTTCAGGGGCACTTGGAGCAACATGTGTTTATCCTTTGCAACTTATCAGAACACGATTACAAGCTCAACCTATGAATTCACCTTCCAGATACAAGGGCATGTCTGATGTTTTTTGGAGAACCCTCCAGAACGAAGGGTTTAGAGGTTTCTACAAGGGCCTTTTTCCAAATTTGCTGAAAGTGGCTCCAGCAGCTAGTATTACTTATTTAGTCTATGAGAAAATGAAAAAGGTGCTCCAGCTAGATTGAAGAACAGGTCGAAGAGGGAACTCTTATTTTGTTTTGCTTAATAAGATAATGATTATAACATTTAGTTTTGACAAGAGTGGCAGGCTAAACAGCCTACCAGAATTATTTGTAGGTTATAGTTTTATCCAGATATACCAGCTGAATGGAGCTGTACAGCAAAAGATAAAATTTCTTTCATTCATTCTCTGAGCTTTATCAAATTTGGTGTTCTTCAGTGGTTTGTGGTTGCATCTTCTGAGCTCCTTGCCATGGTAACAGGATGATATGCAGGTTTGAGAAATCTAACACGTGCAAGAGATAGGACTCGCCTGTATATTATTTCCAAGAAATTTTGTAATAATGGTAACATGCTGCCTTATTATTTTAAATATTATTGGAAGTTATGAGGACTCTTTGGCCTTGCCCATCAAGCT

Ace file of the UniGene sp_v1.1_unigene9098

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Succinate/fumarate mitochondrial transporter, putative n=1 Tax=Ricinus communis RepID=B9RA47_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	mitochondrial substrate carrier family protein	-	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX45

Fln msg:

Fln protein: MSGAGQAVDLAPFSKMESMPKTQRDNRRAECCNPVRNTGEVSLEHVMLALRETKEERELRIRSLFNFFDAMNSGHLDNSQIERGLQALRIPAEYKYAKDLLQVCDSNQDGRVEYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVRAGIEMSDEELARFVEHIDKDNNGIITFEEWRDFLLLYPHEATIENIYRYWERVCPIDIGEQAVIPEGIDRHTHASNYLIAGGVAGALSRTATAPLDRLKVILQVQTSGAHVIPAISNIFREGGLKGFFRGNGINVLKVAPESAIKFFAYEMMKDFVVNITGEEKEDIGTLGRLFAGGTAGAVAQAIVYPMDLVKTRLQVYACEGGKVPKLSNLAKDIWVHEGPRALYRGLLPSLLGMIPYAGIDLAAYETFKDMSRQYILKGEDPGPVVQLGCGTVSGALGATCVYPLQLIRTRLQAQPMNSPSRYKGMSDVFWRTLQNEGFRGFYKGLFPNLLKVAPAASITYLVYEKMKKVLQLD*

Protein Length: 513

Fln nts: ATGGGGCCACTCAAGTCCATATGGGCTCGGCAGAGGACGGAGCAGGGATATATTCAATGAATATATCCCCTCTCGGGAAGCTTGGATCCGGCGAGTTATGCGCGTCGGGTTCCTGTTCCTTGCAGAGGCGGATTGATTTCCCGTCATCAGACGAAGCACATATGCCTCTGGACTGATATGCCGATCTACTGACTGGAATTAGGTATGAGAAATTAACCGAATATTCCACGAAGCGTCCCGGGGCCCCGTAGAAGATTCCATCCCCGGACGCTGCACGACTTCGGGAATTACAAAGTCTTTTTCGTCAGTCAAATTGCGGAAGTAGATCTCACGCGTGGACTTGAAGGAGGGAATATATGTTCCCCAGTCTGTCTGTTTGTCTATTGCTCTGAAGAAAGAAAGCAGACAAGCAATTCTGTGAGTTAATTCAGCTGAGAAGAGATTCAGAAAATATTTGCCTTCCAGTGAAATAAAGATACAGGGTCCAATTTTCATGGTTGTGAATTAGTGATATAAGGTTTGATCGGCCCTACGATTTAAATTTCCGAGCGAATATGAGTTCTCTTGGTTGTGTGCGGTGACTGGAGTATGTAGGGTTTGATCGGCCCTACGATTTCAATTTCCGAACAAGTTTATTATTATTTTTTTCTGGTAGTTCGTATTGAATTAAAGATACGAGGTTTGATCGGCCCCATATTTCATCTTCTTGGCAAATTTTGAGCATATCTCGTGAATTAAAGACATGGGCCCTAGGATTTGAATTTCCGAGCCAATTAAGTCTTTTCTGGGCTGTCTGTAGTTAATTAAAGGTGCATGGATTGATCCGTCCGGGAGATTAATTTCTGAGGATATTTGAGCATTTCTGGCTGTCTGGTGAAGTAAATAGATAGGGTTTGATCAACCAGAGGATTTCAATTTCCGAGCAAATCTGAAGCATTTCTTGTTGCAAGTCGTCGCAATTTCCGTAATTGCAAGCATCGAAGCTCGAAAATTC_-_ATGTCGGGCGCTGGCCAGGCCGTTGACCTTGCTCCCTTCTCCAAAATGGAATCTATGCCAAAGACACAGCGGGATAATCGTCGGGCCGAATGTTGCAATCCTGTGAGAAATACAGGCGAGGTGTCCTTAGAGCATGTTATGTTAGCTTTGAGGGAGACGAAAGAGGAGAGGGAATTGAGGATCCGGAGTCTGTTTAATTTCTTTGATGCAATGAACAGTGGGCACCTTGACAATTCGCAAATTGAGAGGGGTCTACAGGCATTGCGGATACCGGCCGAATACAAGTATGCCAAGGATCTGCTTCAAGTTTGCGATTCTAATCAGGATGGCCGTGTCGAGTACCAGGAGTTTCGGCGGTATATGGATGACAAGGAACTCGAGCTTTACCGCATTTTTCAGGCGATAGATGTGGAACACAATGGCTGCATTTTACCTGAAGAGCTATGGGAAGCACTCGTTAGAGCAGGCATTGAAATGAGTGATGAAGAACTTGCGCGTTTCGTGGAGCACATAGATAAGGATAATAATGGAATCATAACATTTGAAGAGTGGCGGGATTTTCTCCTTTTATATCCACATGAGGCAACCATAGAAAACATATATAGGTATTGGGAAAGGGTTTGCCCCATAGATATTGGGGAGCAAGCAGTTATTCCTGAAGGTATTGACAGGCACACACATGCATCCAATTATCTTATTGCTGGAGGGGTTGCTGGTGCTTTGTCTCGAACTGCTACAGCTCCTCTTGACCGTTTGAAGGTGATATTGCAGGTGCAGACATCAGGAGCTCATGTTATTCCAGCTATTAGTAATATTTTTAGAGAAGGTGGTCTTAAAGGATTTTTCAGAGGGAATGGAATTAATGTTCTGAAAGTAGCTCCTGAATCTGCAATCAAGTTTTTTGCTTATGAAATGATGAAAGATTTTGTTGTTAACATAACTGGAGAAGAAAAGGAAGATATTGGAACTCTTGGCCGCCTTTTTGCTGGTGGGACAGCTGGTGCAGTAGCCCAGGCCATTGTTTACCCAATGGATTTAGTAAAAACGCGTTTGCAAGTATATGCATGTGAGGGTGGAAAAGTTCCGAAGCTGTCAAATTTGGCAAAGGACATATGGGTTCATGAAGGTCCTCGAGCGCTTTACAGAGGGCTTCTTCCATCTTTACTTGGGATGATACCATATGCAGGCATTGATCTTGCTGCTTATGAGACTTTTAAAGACATGTCAAGACAGTATATCCTCAAAGGCGAAGACCCAGGTCCTGTTGTGCAACTAGGATGTGGAACAGTTTCAGGGGCACTTGGAGCAACATGTGTTTATCCTTTGCAACTTATCAGAACACGATTACAAGCTCAACCTATGAATTCACCTTCCAGATACAAGGGCATGTCTGATGTTTTTTGGAGAACCCTCCAGAACGAAGGGTTTAGAGGTTTCTACAAGGGCCTTTTTCCAAATTTGCTGAAAGTGGCTCCAGCAGCTAGTATTACTTATTTAGTCTATGAGAAAATGAAAAAGGTGCTCCAGCTAGATTGA___AGAACAGGTCGAAGAGGGAACTCTTATTTTGTTTTGCTTAATAAGATAATGATTATAACATTTAGTTTTGACAAGAGTGGCAGGCTAAACAGCCTACCAGAATTATTTGTAGGTTATAGTTTTATCCAGATATACCAGCTGAATGGAGCTGTACAGCAAAAGATAAAATTTCTTTCATTCATTCTCTGAGCTTTATCAAATTTGGTGTTCTTCAGTGGTTTGTGGTTGCATCTTCTGAGCTCCTTGCCATGGTAACAGGATGATATGCAGGTTTGAGAAATCTAACACGTGCAAGAGATAGGACTCGCCTGTATATTATTTCCAAGAAATTTTGTAATAATGGTAACATGCTGCCTTATTATTTTAAATATTATTGGAAGTTATGAGGACTCTTTGGCCTTGCCCATCAAGCT

Fln Alignment:

sp_v1.1_unigene9098___MSGAGQAVDLAPFSKMESMPKTQRDNRRAECCNPVRNTGEVSLEHVMLALRETKEERELRIRSLFNFFDAMNSGHLDNSQIERGLQALRIPAEYKYAKDLLQVCDSNQDGRVEYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVRAGIEMSDEELARFVEHIDKDNNGIITFEEWRDFLLLYPHEATIENIYRYWERVCPIDIGEQAVIPEGIDRHTHASNYLIAGGVAGALSRTATAPLDRLKVILQVQTSGAHVIPAISNIFREGGLKGFFRGNGINVLKVAPESAIKFFAYEMMKDFVVNITGEEKEDIGTLGRLFAGGTAGAVAQAIVYPMDLVKTRLQVYACEGGKVPKLSNLAKDIWVHEGPRALYRGLLPSLLGMIPYAGIDLAAYETFKDMSRQYILKGEDPGPVVQLGCGTVSGALGATCVYPLQLIRTRLQAQPMNSPSRYKGMSDVFWRTLQNEGFRGFYKGLFPNLLKVAPAASITYLVYEKMKKVLQLD
A9NX45______________MSGAGQAVDQIPFSKMESIPKTQQDNRRAECCNPVRNSGEASLEHVMLALRETKEERELRIRCLFNFFDAMNSGHLDNSQIERGLQALRIPAEYKYAKDLLNVCDSNQDGRVEYQEFRRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVKAGIEMSDEELARFVEHIDKDNNGIITFEEWRDFLLLYPHEATIENIYRYWERVCPIDIGEQAVIPEGINRHTHASNYLIAGGVAGALSRTATAPLDRLKVILQVQTSGAHVIPAINNIFREGGLKGFFRGNGINVLKVAPESAIKFFAYEMMKNFVVNINGEEKEDIGAFGRLFAGGTAGAIAQAVIYPMDLVKTRLQTYTCEGGKVPKLSKLSKDIWVHEGPRAFYRGLLPSLLGMIPYAGIDLAVYETLKDMSRQYMLKDKDPGPIVQLGCGTVSGALGATCVYPLQLIRTRLQAQSMNSPSRYKGMSDVFWKTLQHEGFSGFYKGLFPNLLKVAPAASITYLVYEKMKKVLQLD

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
746	85		14		0.999981
749			85	14	0.999981
751	14	85			0.999981
755	85			14	0.999981
758	85	14			0.999981
760			14	85	0.999981
762		14	85		0.999981
764	85	14			0.999981
794		13		86	0.999973
800	13			86	0.999973
801	86	13			0.999973
802		13	86		0.999973
806	86		13		0.999973
807		13		86	0.999973
809	86		13		0.999973
810	86			13	0.999973
811	86	13			0.999973
812	13		86		0.999973
813		13	86		0.999973
854	85	14			0.999981
855			14	85	0.999981
857		14		85	0.999981
859	85			14	0.999981
863		14		85	0.999981
864		14		85	0.999981
1146		14		85	0.993533
1439		87		12	0.992554
1498		50		33	1.0
1515	83	16			0.994512
1518		16	83		0.994512
1519	83		16		0.994512
1521	83		16		0.994512
1523		16		83	0.994512
1524	83	16			0.994512
1525	83			16	0.994512
1530	83			16	0.994512
1531	83		16		0.994512
1537	83	16			0.994512
1580	16		83		0.994512
2091	16		83		0.994512
2098		66		33	1.0
2142	16		83		0.994512
2238	40		60		1.0
2271		16		83	0.994512
2277	83		16		0.994512
2712	83		16		0.994512
2741			17	82	1.0
2743		17		82	1.0
2744	82		17		1.0
2746		82	17		1.0
2748	82	17			1.0
2749	82	17			1.0
2752			17	82	1.0
2754		17	82		1.0
2758		17		82	1.0
2762		17		82	1.0
2763	17	82			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain