SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9063

Length: 1526 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9063

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lpa2, ITPK1; low phytic acid2 (EC:2.7.1.134 2.7.1.159); K00913 inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase [EC:2.7.1.159 2.7.1.134]	-	-	63%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 1; Zea mays (Maize).	-	-	63%
Blast2go	inositol phosphate kinase	-	-	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Inositol-1,3,4-trisphosphate 5/6-kinase.	EC:2.7.1.159	-	0.0	63%

Source	KEGGs	Term	Type	Identity
AutoFact	Inositol phosphate metabolism	00562		63%
AutoFact	Metabolic pathways	01100		63%
AutoFact	Phosphatidylinositol signaling system	04070		63%
AutoFact	Inositol-tetrakisphosphate 1-kinase.	EC:2.7.1.134	-	63%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Inositol phosphate metabolism	00562		0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	inositol or phosphatidylinositol phosphorylation	GO:0046853	Biological Process	0.0	77%
Blast2go	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Blast2go	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	77%
Blast2go	ATP-grasp fold	IPR011761	-	77%
Blast2go	Inositol-tetrakisphosphate 1-kinase, plant	IPR017427	-	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q84Y01

Fln msg: STOP codon was not found. Distance to subject end: 26 aas, Unexpected STOP codon in 5 prime region,

Fln protein: MSNEKRYGIGYALAPKKKQSFIQISLVELARKRGIDLICIDYNKPLIDQGPFDCILHKLTGEEWKKQLQEYTLKHPHVCIIDRPEAIERLHNRISMLQVVSELRVIQKNETFGIPKQIVVYLAEDLSCSETPVELKFPVIAKPLVADGSMKSHKMSLVFNSEGLLKLKPPLVLQEFVNHGGVIFKVYVVGDYVKCVKRKSLPDVAEEMLKTAEGSMSFCQISNVTQDHENENYYGIMNLEDAEMPPATFVSDIAKGLRQALGLNLFNFDVIRDTKAGNHYLVIDINYFPGYAKMPAYESVLTDFFCKIFDEKKSLEGGAVTDAKLDEKINATRKQDGVYEGIAECCNVDEKIEAT

Protein Length: 356

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTTTGCATATTCCTTCTTTGATTTCCAAACCTTTGAAATTAAGTGCCTGTATTATTTATATCGTCGTGACCTTGGCTGTCACTCAGGTGTGTTGTAATGAGCATCGAACCCTAGGGAGCTTCGGCGCCAAATTTTCTGAGAGTTGTCCCAACCTCGGAACGAACGATTAGTCTTCTAAAAGTTGGGAGGCTTCTAGCCAAAAACCAAAGAAGCTGATGCGATGAAAGATTGCTGGCATTGCCAGTATTTGAACGCCCACCGTCGGGATCGATAGTGTATCCCTGGTAAGCTGCGGAGCTTAATTTTCATTTTCTTGTAAAGTCGTATTTTAGAATTGGGTGTCGAGGTTTTGAAATGTTCGTTGAATTTTCGAGCGACCCACTTCTCGCAGCACATTTTCTGATACGAAATTCTGTGTGAAAAGAACCAAAA_-_ATGTCGAACGAGAAACGTTATGGAATTGGGTATGCCCTGGCACCCAAGAAGAAACAGAGCTTTATCCAGATTTCATTAGTTGAGCTTGCCAGGAAACGGGGTATAGACCTAATTTGTATTGATTACAATAAACCTTTGATAGATCAGGGCCCCTTTGATTGTATTCTGCACAAACTAACCGGGGAGGAGTGGAAAAAACAGTTGCAGGAATACACATTAAAACACCCACACGTCTGCATTATTGATAGGCCAGAGGCCATTGAGAGGCTACACAATCGAATTTCGATGCTGCAGGTGGTGTCCGAATTGAGGGTTATACAGAAGAATGAGACATTTGGGATACCTAAACAAATTGTTGTGTATTTGGCCGAAGACCTGTCTTGTTCGGAGACCCCGGTGGAGTTGAAATTCCCAGTGATTGCGAAGCCGCTCGTTGCTGATGGGAGCATGAAGTCACACAAGATGTCTCTCGTGTTCAATTCTGAAGGGCTGCTGAAGCTGAAGCCTCCGCTGGTGTTGCAGGAGTTTGTTAATCATGGCGGGGTGATATTCAAAGTGTATGTTGTGGGGGATTATGTTAAGTGTGTGAAGAGGAAGTCCCTGCCTGATGTGGCTGAGGAGATGCTTAAGACCGCAGAGGGCTCTATGTCGTTCTGCCAGATTTCGAATGTTACCCAGGATCATGAGAATGAGAATTACTATGGGATTATGAATCTGGAGGATGCCGAAATGCCGCCGGCAACGTTTGTTTCTGATATTGCTAAGGGCCTGCGGCAGGCCTTGGGGTTGAATTTATTCAATTTTGATGTTATCAGAGATACCAAGGCTGGGAATCATTATCTGGTTATAGATATCAATTACTTTCCTGGCTATGCTAAGATGCCAGCTTATGAATCGGTGCTGACTGATTTTTTCTGTAAGATTTTTGATGAGAAGAAGTCATTGGAGGGTGGTGCAGTTACTGATGCTAAGTTGGATGAGAAGATTAATGCTACCAGAAAGCAAGATGGTGTTTATGAGGGTATCGCTGAGTGCTGTAATGTGGATGAGAAGATTGAAGCTACCA

Fln Alignment:

sp_v1.1_unigene9063___MSNEKRYGIGYALAPKKKQSFIQISLVELARKRGIDLICIDYNKPLIDQGPFDCILHKLTGEEWKKQLQEYTLKHPHVCIIDRPEAIERLHNRISMLQVVSEL-RVIQKNETFGIPKQIVVYLAEDLSCSETPVELKFPVIAKPLVADGSMKSHKMSLVFNSEGLLKLKPPLVLQEFVNHGGVIFKVYVVGDYVKCVKRKSLPDVAEEMLKTAEGSMSFCQISNVTQDHENENYYGIMNLEDAEMPPATFVSDIAKGLRQALGLNLFNFDVIRDTKAGNHYLVIDINYFPGYAKMPAYESVLTDFF
Q84Y01______________VTHPPRYVIGYALAPKKQQSFIQPSLVAQAASRGMDLVPVDASQPLAEQGPFHLLIHKLYGDDWRAQLVAFAARHPAVPIVDPPHAIDRLHNRISMLQVVSELDHAADQDSTFGIPSQVVVYDAAALADFGLLAALRFPLIAKPLVADGTAKSHKMSLVYHREGLGKLRPPLVLQEFVNHGGVIFKVYVVGGHVTCVKRRSLPDVSPEDDASAQGSVSFSQVSNLPTERTAEEYYGEKSLEDAVVPPAAFINQIAGGLRRALGLQLFNFDMIRDVRAGDRYLVIDINYFPGYAKMPGYETVLTDFF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
667		20		80	0.995493
694	14	85			0.993533
790	87	12			0.992554
791	87		12		0.992554
794	87			12	0.992554
798	87	12			0.992554
805	87	12			0.992554
807	87		12		0.992554
808		87		12	0.992554
812	87	12			0.992554
813	87			12	0.992554
842		12		87	0.992554
861	14		85		0.993533
947	11	88			0.923564
951	88		11		0.923564
1175		11		88	0.923564
1191		83		16	0.994512
1208		85		14	0.993533
1227	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain