SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9061

Length: 2106 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9061
CATTCCCATTTCTTTGTCAAACATTTCTACTTTGACCATCTTGACAATTTCCCAAAACAAACTCATTGGCACCATTCCACAAGAGTTGGGCTTCCTCACCAATTTGAATTATCTTAATTTATGGGGAAATCAATTGAGTGGAAACATACCAATTTCTATTGGAAATTGTTCTAACCTCAAATTGCTTAGTTTAGGTAACAACATGTTGAGTGGGAGTGTGCCATTAGAGTTAGGTAAGCTATCACTTCTTGAAAGGTTAGATTTACCTGACAATGATCTTGATAGTGGCACCACTACAACCATGCCCTTTCTTGTAGCTCTTACCAATTGTTCCCACCTACAAGAAATAAGCTTGAGGAACAATAAATTAAGTGGTGTCTTGCCTCTTGACATAGGACACCTTTCTACCAATTTGTCTTTCTTGTCATTAGGAAACAATAGAATAAAAGGAAACATCCCTCCACATATTGGTAATCTTACCAGCCTGAACTATCTAAATTTAAGTGGAAACCTTTTGACTGGAAACATTCCACCATTAGGAAACCTTAAAATGATAGAAAGATTGTGTTTAAGTAACAATAGATTAGAAGGAAACATCCCCGATGACTTTGAACAATTACAACACCTTGGGCTATTGGACATCAGTGAAAACAACCTCTCTGGAAGGATTCCCAATTCCCTTGCGCCCCTTAAACAACTAAGAAGAGTCCTCCTCCATCACAACCAATTATCAGGAAGCATACCTTCCAGCTTAGGAAGTTGTCTAAATTTAGAATTGCTTGACCTATCTCACAATATGCTCACTGGTAGCATACCACGAGAAATCGCCAAACTTTACAATTTACATTTCTATTTGAATTTGTCATGGAATTTATTAGAAGGCTCCTTGCCCTTAGAGATTGGTAAAATTTCAATGGCTCAAGCTATAGATGTTTCTTCCAACCGATTGATTGGGGCAATTCCACCTACACTTGGAAGCTGCAGTGAACTACAATCATTGAATTTATCTCAAAATTCCTTCCAAGGCTCTATTCCAGATTCCTTTGAAAAATTACAAAGCCTCTTGAGCCTAGATCTCTCTTCCAACTCCTTATCAGGTACAATACCAATTACTCTTGAGAAGCTGAAAATGCTTCAATCTTTGAATTTGTCTTTCAACCACCTCACAGGGGAGATTCCGAAAGGAGGGATTTTTGCAAATCAAACAAGTGCCATCTTTTTAATTGGAAATCCCGGTCTTTGTGGACCACACATATTCAATTTATCTGCATGTCCAACGCCAAGAAGTCATTTTCCATTTGTGAAAAGAATATTACTGCCAATCATTGGAGCTCTTGTTTTTATACTATGTTGTCTACTTTTGGTATACTTTTGGAAAGGAAATATACATATGGAAAACTTCAATTTCTCACAAGCTATTTTCCAAAAGCTAGTGCACCAAAGGATCTCATATCAAGAGCTTCACATAGCAACTAATGGGTTTTCCAATGCCAACTTGTTGGGAAAAGGAAATTATGGGTTAGTGTATAAAGGAATTTTGAGTGATGGTTCATTTGTTGCTGTTAAGGTTCTCCAGTTGCAAAATGAACAAGTTGAAAAGAGTTTTAAAGCAGAATGTAGTGTCTTGCAAAAGGTTCGGCATAGAAATCTGGTGAGAGTCATAACTTCATGTTCCAACCTCCAATTCAAAGCTTTGGTGTTCGAGTTTATGCCTAAGGGAAGTTTAGAGAATCATTTGTATCCTGATAGAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACACGATTAGACATTGCCATAGATGTGGCCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAACTAGTTCATTGTGATATAAAACCCAGCAATGTACTCTTGGATGAAGACATGTCAGACCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCACTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGGTATGACTTTTAAAACAATACTTTCACTTGTCTTTTCTCAGTAATAATTTTGTATTATATGGATTGGTTAAGTAAATCTTGATGA

Ace file of the UniGene sp_v1.1_unigene9061

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)	-	-	39%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	33%
Blast2go	protein	-	-	59%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	59%
Blast2go	Leucine-rich repeat	IPR001611	-	59%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	59%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	59%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	59%
Blast2go	Protein kinase-like domain	IPR011009	-	59%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	59%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	59%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 142 aas, your sequence is shorter than subject: 688 - 1145

Fln protein: IPISLSNISTLTILTISQNKLIGTIPQELGFLTNLNYLNLWGNQLSGNIPISIGNCSNLKLLSLGNNMLSGSVPLELGKLSLLERLDLPDNDLDSGTTTTMPFLVALTNCSHLQEISLRNNKLSGVLPLDIGHLSTNLSFLSLGNNRIKGNIPPHIGNLTSLNYLNLSGNLLTGNIPPLGNLKMIERLCLSNNRLEGNIPDDFEQLQHLGLLDISENNLSGRIPNSLAPLKQLRRVLLHHNQLSGSIPSSLGSCLNLELLDLSHNMLTGSIPREIAKLYNLHFYLNLSWNLLEGSLPLEIGKISMAQAIDVSSNRLIGAIPPTLGSCSELQSLNLSQNSFQGSIPDSFEKLQSLLSLDLSSNSLSGTIPITLEKLKMLQSLNLSFNHLTGEIPKGGIFANQTSAIFLIGNPGLCGPHIFNLSACPTPRSHFPFVKRILLPIIGALVFILCCLLLVYFWKGNIHMENFNFSQAIFQKLVHQRISYQELHIATNGFSNANLLGKGNYGLVYKGILSDGSFVAVKVLQLQNEQVEKSFKAECSVLQKVRHRNLVRVITSCSNLQFKALVFEFMPKGSLENHLYPDRDDNNDEDLCELRLKTRLDIAIDVAHAMEYLHHDSFVQLVHCDIKPSNVLLDEDMSDHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAPGMTFKTILSLVFSQ*

Protein Length: 689

Fln nts: CATTCCCATTTCTTTGTCAAACATTTCTACTTTGACCATCTTGACAATTTCCCAAAACAAACTCATTGGCACCATTCCACAAGAGTTGGGCTTCCTCACCAATTTGAATTATCTTAATTTATGGGGAAATCAATTGAGTGGAAACATACCAATTTCTATTGGAAATTGTTCTAACCTCAAATTGCTTAGTTTAGGTAACAACATGTTGAGTGGGAGTGTGCCATTAGAGTTAGGTAAGCTATCACTTCTTGAAAGGTTAGATTTACCTGACAATGATCTTGATAGTGGCACCACTACAACCATGCCCTTTCTTGTAGCTCTTACCAATTGTTCCCACCTACAAGAAATAAGCTTGAGGAACAATAAATTAAGTGGTGTCTTGCCTCTTGACATAGGACACCTTTCTACCAATTTGTCTTTCTTGTCATTAGGAAACAATAGAATAAAAGGAAACATCCCTCCACATATTGGTAATCTTACCAGCCTGAACTATCTAAATTTAAGTGGAAACCTTTTGACTGGAAACATTCCACCATTAGGAAACCTTAAAATGATAGAAAGATTGTGTTTAAGTAACAATAGATTAGAAGGAAACATCCCCGATGACTTTGAACAATTACAACACCTTGGGCTATTGGACATCAGTGAAAACAACCTCTCTGGAAGGATTCCCAATTCCCTTGCGCCCCTTAAACAACTAAGAAGAGTCCTCCTCCATCACAACCAATTATCAGGAAGCATACCTTCCAGCTTAGGAAGTTGTCTAAATTTAGAATTGCTTGACCTATCTCACAATATGCTCACTGGTAGCATACCACGAGAAATCGCCAAACTTTACAATTTACATTTCTATTTGAATTTGTCATGGAATTTATTAGAAGGCTCCTTGCCCTTAGAGATTGGTAAAATTTCAATGGCTCAAGCTATAGATGTTTCTTCCAACCGATTGATTGGGGCAATTCCACCTACACTTGGAAGCTGCAGTGAACTACAATCATTGAATTTATCTCAAAATTCCTTCCAAGGCTCTATTCCAGATTCCTTTGAAAAATTACAAAGCCTCTTGAGCCTAGATCTCTCTTCCAACTCCTTATCAGGTACAATACCAATTACTCTTGAGAAGCTGAAAATGCTTCAATCTTTGAATTTGTCTTTCAACCACCTCACAGGGGAGATTCCGAAAGGAGGGATTTTTGCAAATCAAACAAGTGCCATCTTTTTAATTGGAAATCCCGGTCTTTGTGGACCACACATATTCAATTTATCTGCATGTCCAACGCCAAGAAGTCATTTTCCATTTGTGAAAAGAATATTACTGCCAATCATTGGAGCTCTTGTTTTTATACTATGTTGTCTACTTTTGGTATACTTTTGGAAAGGAAATATACATATGGAAAACTTCAATTTCTCACAAGCTATTTTCCAAAAGCTAGTGCACCAAAGGATCTCATATCAAGAGCTTCACATAGCAACTAATGGGTTTTCCAATGCCAACTTGTTGGGAAAAGGAAATTATGGGTTAGTGTATAAAGGAATTTTGAGTGATGGTTCATTTGTTGCTGTTAAGGTTCTCCAGTTGCAAAATGAACAAGTTGAAAAGAGTTTTAAAGCAGAATGTAGTGTCTTGCAAAAGGTTCGGCATAGAAATCTGGTGAGAGTCATAACTTCATGTTCCAACCTCCAATTCAAAGCTTTGGTGTTCGAGTTTATGCCTAAGGGAAGTTTAGAGAATCATTTGTATCCTGATAGAGATGATAACAATGATGAAGATTTGTGTGAATTGAGGTTGAAAACACGATTAGACATTGCCATAGATGTGGCCCATGCCATGGAATATCTTCACCATGATTCTTTTGTGCAACTAGTTCATTGTGATATAAAACCCAGCAATGTACTCTTGGATGAAGACATGTCAGACCATGTCACAGATTTTGGTATTGCAAGGCTAATTGGTGCAACCTCAAATGATTCACTTACATCATCACTTGCTTTGAAAGGATCAATGGGTTACATTGCCCCAGGTATGACTTTTAAAACAATACTTTCACTTGTCTTTTCTCAGTAATAATTTTGTATTATATGGATTGGTTAAGTAAATCTTGATGA

Fln Alignment:

sp_v1.1_unigene9061___IPISLSNISTLTILTISQNKLIGTIPQELGFLTNLNYLNLWGNQLSGNIPISIXXXXXXXXXXXXXXXXXXXVPXXXXXXXXXXXXXXPDNDLDSGTTTTMPFLVALTNCSHLQEISLRNNKLSGVLPLDIGHLS-----------------------TNLSFLSLGNNRIKGNIPPHIXXXXXXXXXXXXXXXXXXXIPP-LGNLKMIERLCLSNNRLEGNIPDDFEQLQHLGLLDISENNLSGRIPNSLAPLKQLRRVLLHHNQLSGSIPSSLGSCLNLELLDLSHNMLTGSIPREIAKLYNLHFYLNLSWNLLEGSLPLEIGKISMAQAIDVSSNRLIGAIPPTLGXXXXXXXXXXXXXXXXXXIPDSFEKXXXXXXXXXXXXXXXGTIPITLEKLKMLQSLNLSFNHLTGEI-----------------------PKGGIFANQTSAIFLIGNPGLC-GPHIFNLSACPTPRSHFPFVKRILLPIIGALVFILCCLLLVYFWKGNIHMENFNFSQAIFQKLVHQRI-SYQELHIATNGFSNA----NLLGKGNYGLVYKGILSDGSFVAVKVLQLQNE-QVEK-----SFKAECSVLQKVRHRNLVRVITSCSNLQFKALVFEFMPKGSLENHLYPDRDDNNDEDLCELRLKTRLDIAIDVAHAMEYLHHDSFVQLVHCDIKPSNVLLDEDMSDHVTDFGIARLIGATSNDSLTSSLALKGSMGYIAP--GMTFK
Q9FEU2______________IPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIP------AALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNLEGPIPSSLGSCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRLGGELPRALGFLHGLQVVDLSANELTGLIPANLGNLVAL-TKLTLNGNALSGAIPWEISRCTNLQLLDLSLNRFSGQIPPEMG-----------------------KCKRLEIALNLSWNNLSGSIPAQFSGLTKLASLDLSHNLLSGNLSALAQLSESCFSQHFFQRFFRVSARYQVFSDLCLPSDLSGNAALCTSEEVCFMSSGAHFEQRVFEVKLVMI----LLFSVTAVMMILGIWLVTQSGEWVTGKWRIPRSGGHGRLTTFQKLNFSADDVVNALVDSNIIGKGCSGVVYKAEMGNGDVIAVKKLWTGKESECEKVRERDSFSAEVNTLGAIRHRNIVRLLGCCTNGRSKLLMYDYMPNGSLGGLLHEKRS--------MLDWEIRYNIVLGVRRGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLV--DSADFNRSSTTVAGSYGYIAPEYGYTMK

SNPs (tot: 112)

Position	A %	C %	G %	T %	Probability
66		25		75	0.996473
85	16	16	66		0.988813
86		16		83	0.994512
88			83	16	0.994512
92		33		66	1.0
93			16	83	0.994512
94	33	50		16	1.0
96	16			83	0.994512
98	83			16	0.994512
100	16	83			0.994512
111	83	16			0.994512
115	16			83	0.994512
116	50		16	33	1.0
117	83	16			0.994512
123		16	83		0.994512
133	83		16		0.994512
182		33	16	50	1.0
183	16			83	0.994512
185	16	83			0.994512
188	66		16	16	0.988813
189	16		83		0.994512
190		16		83	0.994512
191	16	16		66	0.988813
197	66	16		16	0.988813
198	50	50			1.0
199	16	83			0.994512
204	16			83	0.994512
214		50	50		1.0
215	83			16	0.994512
217	16			83	0.994512
224		40		60	1.0
255	50		50		1.0
260		25	50	25	0.995533
262	20			80	0.995493
267	40	60			1.0
268	40			60	1.0
269		40	60		1.0
270	80		20		0.995493
271		60	40		1.0
300	20	80			0.995493
306		80		20	0.995493
307		80	20		0.995493
318		80		20	0.995493
338		75		25	0.996473
341	25	75			0.996473
342	75		25		0.996473
344	50		50		1.0
345	50		25	25	0.995533
347	75			25	0.996473
351	50		50		1.0
352		75		25	0.996473
353			25	75	0.996473
368		25	25	50	0.995533
382	50		50		1.0
419	25	25		50	0.995533
420	25			75	0.996473
421	20	80			0.995493
428	80	20			0.995493
429		40		60	1.0
433	20		80		0.995493
434	80			20	0.995493
435	60		40		1.0
440			20	80	0.995493
482		60	20	20	0.99255
484	20		80		0.995493
488	20		60	20	0.99255
489	80			20	0.995493
490	80	20			0.995493
493	80		20		0.995493
507	50		50		1.0
508		25	75		0.996473
521		25		75	0.996473
568			80	20	0.995493
596		80		20	0.995493
644		75	25		0.996473
686	33		66		1.0
713		75		25	0.996473
737	83		16		0.994512
747	50			50	1.0
761	16			83	0.994512
779			83	16	0.994512
782		50		50	1.0
794		83		16	0.994512
809		16		83	0.994512
830		83		16	0.994512
860		40		60	1.0
881	75		25		0.996473
912			25	75	0.996473
918			75	25	0.996473
932		50		50	1.0
933	50		50		1.0
935		50		50	1.0
1074			75	25	0.996473
1101	75			25	0.996473
1749	77		22		0.999999
1752			77	22	0.999999
1771	87	12			0.992554
1772	25		75		1.0
1799	12	87			0.992554
1812		87		12	0.992554
1823	12		87		0.992554
1847		83		16	0.994512
1854	16	83			0.994512
1865		33	66		1.0
1898	16	83			0.994512
1900		33		66	1.0
1920	20		80		0.995493
1925		20	80		0.995493
1943	20		80		0.995493
1975	80		20		0.995493
2011		25		75	0.996473
2018	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain