SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9057

Length: 2286 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9057
CGTCGTGACCTTGGCTGTCACTCAACGCAACGACAAACCTTAACTGTAACTAAAAATGTGATCAGAGCGAGCTGCAAAGTAAAAGAAAAGCAAAAGGGAGACGTGCAGCAAGAGAAGCAGGGTCAGATATACCTAACGTTCAAAGGTAAGCGAGCGGTGGCGTGTTCTGCGGGCAGCGCAGGTTGTTGTGGTTATTGCAGTTTCAATTAGCCATCTGCGTTGGCGATTGTACGCCGGCTGCCGCTCATTCACGCATGGAATCTTGCTGTTAAAGCGCGTGGACGTTCAGAAATCTCATGTCCATAAGGGTTTGATGTCAAGACGTCATGTATAATCCCAATTGGGAAAAAATCGATTCGAGGGTTAAAGTCTCAGGCATAAATTACTACAGAAAAAGACTGCAAATGCTTGCCGGCTCTGTGCCAATGCAAGGCCTTATTTCCAGTTAATGGCAAGCGAGTGCCTCTACCGACGACCCCAGTTTGATCTTTTGGTCTGGACCATATTGACAAGTACAACGGCTCAGGAATAAATCATCAAGCCGTGTGCAGTGACAAGTGGTTGCTGCTTTTGAAAGGAAGGTAGATTTGTGGATCCAGAATTCAAGAGATCCTTCAACTGCACTTCCTTGAACATTCAAGTTTCTTTTGGCAGAAATGTTAAGACTAAGATGACATCTCATGGACCTTTTGTAGACATCAGAGTACAGATGTCTGATACCAATGACAAACAGCATGCTATGCACAGACTAAAGATTGTTGCAAGTGTAATCCCTTGATAAATGTCTTTGGATCAACTTACAGAAAGTAACCTTAAGAATGACAAGTTGTCCAATTACAACTTTGAAACAATGGGGGAAGTAACTATAAATGTTGCCCAGGGAATCCAGCAAGAAAATACTGATTATGTTAGATTGGGTTATTTTGATGAGCAAGAGCCTGAGGAATATGGGAGGTTCCTGCCATTTAAAGTGCCGGGCACATGTTCTATGTGGTGGTGGATTAAAGTGGTTTTGTTAGGCCTTTGTTTGTTGGCACTTGTAGCCTCTTTCTTCATCTGGGGAATGCCATTTCTAATTGACAAGGTGATTATACCCATTTTGGATTGGGAGGCGTTGACTTTTAGCACACACACTCTTGTGTTTGTGCTTATTTTATCCATAGGATTCCTTCCTGTTTTCTTGCTACCATCAGCACCTTCGATGTGGTTAGCAGGAATAAACTTTGGATATGGCTTTGGATTCCTCATAGTAATGGCAGGCACCAGTGTGGGCATGTCTTTACCTTACTTCATCGGGTCACTTTTTCACAGCCGGATACAAAAATGGCTTGAGAGATGGCCTAAAAAAGCTGCTGTGATCAGGCTAGCAGGAGAGGGAAATTGGTTCCATCAGTTTCGAGCTGTTGCTCTCTTAAGGATCTCACCATTTCCTTATATTATTTTCAATTATGCTGTTGTTGCGACAAATGTCAAGTATTGTCCATACATAATCGGGTCATACATTGGAACAATACCTGAAGTTTTTATCACTATCTACAGTGGCAGGCTGCTAAGAGAATTGGCAGACATGAAATATCATCATTTAACGACATTGCAGAATGTATATAATACTCTGGGCTTTTGCATGGCTGTTGGTACCACAATTTGCATCACACTGTACGCGAAGAAAGCATTACGCACTCTGCAGACATGAAAACAATGCAACAGTGGAATTGCTTCACACTATACTAAAAAACTGAAGGGATATGACCACAATATCTCAACCAAATCAAAGATGTAGTTTGGTAGTAAAATGGAGGTCAACACATGATGTGACGTCCGTTGGGAAATGTTGGAGTTTTTATGGATTCTAATTCAGTATGCAGTCAACAGATGAGGTCAAGTTTTCCATTTTCGTGCGTACGTGATTCTATGTTTCTTCATATTATTTGTTGTTGATACAAGTCGTATTGACTGTAGAAAAATATCGTCAATCAGATGAAATTTGTAGTCATACACGCAGTGGGTAAAATGTATATGTTATCTTTACACTGTTGGTGCAAATTTCATCTAGTAATCAATTTAAATTGTATCATTTTTAGTATCAATGAATTTTTAAAGTGCAAAAGATCAAGTCATAACTTGAAAAGCATAAAGTGGAGCATTTATGACTCTGGTATGTAGTTCTCGTAGACAGACACGAAATGTGGACATTTATTTTTTAGCTTTACACTATGCTTGTACAAATTTCATCCGGTAATAGATTTAAATTGTATCAACTTTCATATCAATGAATCTGTAAAGTGC

Ace file of the UniGene sp_v1.1_unigene9057

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNARE_assoc domain containing protein	-	-	2.0e-21	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SNARE associated Golgi protein	IPR015414	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMC3

Fln msg:

Fln protein: MSLDQLTESNLKNDKLSNYNFETMGEVTINVAQGIQQENTDYVRLGYFDEQEPEEYGRFLPFKVPGTCSMWWWIKVVLLGLCLLALVASFFIWGMPFLIDKVIIPILDWEALTFSTHTLVFVLILSIGFLPVFLLPSAPSMWLAGINFGYGFGFLIVMAGTSVGMSLPYFIGSLFHSRIQKWLERWPKKAAVIRLAGEGNWFHQFRAVALLRISPFPYIIFNYAVVATNVKYCPYIIGSYIGTIPEVFITIYSGRLLRELADMKYHHLTTLQNVYNTLGFCMAVGTTICITLYAKKALRTLQT*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGCAACGACAAACCTTAACTGTAACTAAAAATGTGATCAGAGCGAGCTGCAAAGTAAAAGAAAAGCAAAAGGGAGACGTGCAGCAAGAGAAGCAGGGTCAGATATACCTAACGTTCAAAGGTAAGCGAGCGGTGGCGTGTTCTGCGGGCAGCGCAGGTTGTTGTGGTTATTGCAGTTTCAATTAGCCATCTGCGTTGGCGATTGTACGCCGGCTGCCGCTCATTCACGCATGGAATCTTGCTGTTAAAGCGCGTGGACGTTCAGAAATCTCATGTCCATAAGGGTTTGATGTCAAGACGTCATGTATAATCCCAATTGGGAAAAAATCGATTCGAGGGTTAAAGTCTCAGGCATAAATTACTACAGAAAAAGACTGCAAATGCTTGCCGGCTCTGTGCCAATGCAAGGCCTTATTTCCAGTTAATGGCAAGCGAGTGCCTCTACCGACGACCCCAGTTTGATCTTTTGGTCTGGACCATATTGACAAGTACAACGGCTCAGGAATAAATCATCAAGCCGTGTGCAGTGACAAGTGGTTGCTGCTTTTGAAAGGAAGGTAGATTTGTGGATCCAGAATTCAAGAGATCCTTCAACTGCACTTCCTTGAACATTCAAGTTTCTTTTGGCAGAAATGTTAAGACTAAGATGACATCTCATGGACCTTTTGTAGACATCAGAGTACAGATGTCTGATACCAATGACAAACAGCATGCTATGCACAGACTAAAGATTGTTGCAAGTGTAATCCCTTGATAA_-_ATGTCTTTGGATCAACTTACAGAAAGTAACCTTAAGAATGACAAGTTGTCCAATTACAACTTTGAAACAATGGGGGAAGTAACTATAAATGTTGCCCAGGGAATCCAGCAAGAAAATACTGATTATGTTAGATTGGGTTATTTTGATGAGCAAGAGCCTGAGGAATATGGGAGGTTCCTGCCATTTAAAGTGCCGGGCACATGTTCTATGTGGTGGTGGATTAAAGTGGTTTTGTTAGGCCTTTGTTTGTTGGCACTTGTAGCCTCTTTCTTCATCTGGGGAATGCCATTTCTAATTGACAAGGTGATTATACCCATTTTGGATTGGGAGGCGTTGACTTTTAGCACACACACTCTTGTGTTTGTGCTTATTTTATCCATAGGATTCCTTCCTGTTTTCTTGCTACCATCAGCACCTTCGATGTGGTTAGCAGGAATAAACTTTGGATATGGCTTTGGATTCCTCATAGTAATGGCAGGCACCAGTGTGGGCATGTCTTTACCTTACTTCATCGGGTCACTTTTTCACAGCCGGATACAAAAATGGCTTGAGAGATGGCCTAAAAAAGCTGCTGTGATCAGGCTAGCAGGAGAGGGAAATTGGTTCCATCAGTTTCGAGCTGTTGCTCTCTTAAGGATCTCACCATTTCCTTATATTATTTTCAATTATGCTGTTGTTGCGACAAATGTCAAGTATTGTCCATACATAATCGGGTCATACATTGGAACAATACCTGAAGTTTTTATCACTATCTACAGTGGCAGGCTGCTAAGAGAATTGGCAGACATGAAATATCATCATTTAACGACATTGCAGAATGTATATAATACTCTGGGCTTTTGCATGGCTGTTGGTACCACAATTTGCATCACACTGTACGCGAAGAAAGCATTACGCACTCTGCAGACATGA___AAACAATGCAACAGTGGAATTGCTTCACACTATACTAAAAAACTGAAGGGATATGACCACAATATCTCAACCAAATCAAAGATGTAGTTTGGTAGTAAAATGGAGGTCAACACATGATGTGACGTCCGTTGGGAAATGTTGGAGTTTTTATGGATTCTAATTCAGTATGCAGTCAACAGATGAGGTCAAGTTTTCCATTTTCGTGCGTACGTGATTCTATGTTTCTTCATATTATTTGTTGTTGATACAAGTCGTATTGACTGTAGAAAAATATCGTCAATCAGATGAAATTTGTAGTCATACACGCAGTGGGTAAAATGTATATGTTATCTTTACACTGTTGGTGCAAATTTCATCTAGTAATCAATTTAAATTGTATCATTTTTAGTATCAATGAATTTTTAAAGTGCAAAAGATCAAGTCATAACTTGAAAAGCATAAAGTGGAGCATTTATGACTCTGGTATGTAGTTCTCGTAGACAGACACGAAATGTGGACATTTATTTTTTAGCTTTACACTATGCTTGTACAAATTTCATCCGGTAATAGATTTAAATTGTATCAACTTTCATATCAATGAATCTGTAAAGTGC

Fln Alignment:

sp_v1.1_unigene9057___MSLDQLTESNLKNDKLSNYNFETMGEVTINVAQGIQQENTDYVRLGYFDEQEPEEYGRFLPFKVPGTCSMWWWIKXXXXXXXXXXXXXSFFIWGMPFLIDKVIIPILDWEALTFSTHTLVFVLILSIGFLPVFLLPSAPSMWLAGINFGYGFGFLIVMAGTSVGMSLPYFIGSLFHSRIQKWLERWPKKAAVIRLAGEGNWFHQFRAVALLRISPFPYIIFNYAVVATNVKYCPYIIGSYIGTIPEVFITIYSGRLLRELADMK--YHHLTTLQNVYNTLGFCMAVGTTICITLYAKKALRTLQT
B8LMC3______________MSLDQLPQSNLKDDKLSSTHLETMGEVIVNVAQGIQQENTDYVRLGYFDEHEAEEYGILLPVKEPGACSMWWWIKVVLLGFCLLALVASFFNWGMPFLIDKVIIPVLDWEALTFSTHTLVFVLIASIGLFPVFLLPSAPSMWLAGINFGYGFGFLIVMAGTSVGMSLPYFIGSLFHSRIQKWLERWPKKAAVIRLAGEGNWFHQFRAVALLRISPFPYIIFNYAVVATNVKYCPYIIGSYIGTIPEVFITIYSGRLLRELADMKYEYHHLTTLQNVYNTLGFCMAVGTTICITLYAKKALRTMQT

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
414	15		84		0.999986
524		83		16	0.999991
638	10	90			0.90298
888	88		11		0.999952
889			88	11	0.999952
891	88		11		0.999952
892	88			11	0.999952
895	88	11			0.999952
896	88	11			0.999952
897	88			11	0.999952
899	88		11		0.999952
905	11			88	0.999952
1029		16		83	0.999991
1032	8	16		75	0.99999
1034			75	25	1.0
1035		83	16		0.999991
1038		16		83	0.999991
1044		83	16		0.999991
1047		81	18		0.999994
1049		18		81	0.999994
1050	18			81	0.999994
1053		18		81	0.999994
1054	18	81			0.999994
1119		87		12	0.992554
1165	23			76	1.0
1169		30		69	1.0
1312	12	87			0.999964
1313		87		12	0.999964
1316	87		12		0.999964
1516		71		28	1.0
1553	90		10		0.90298
1809		2	23		1.0
1811	71	23		5	1.0
1812		5		94	0.9982
1815		24	75		1.0
1818		5	70		1.0
1820		94		5	0.998744
1821	22	71	5		1.0
1823		5		94	0.998894
1826			93	6	0.99903
1827		6	93		0.99903
1829	93			6	0.99903
1830	93	6			0.99903
1831	6			93	0.99903
1839		9		90	1.0
1901	36		64		1.0
2008			32	67	1.0
2041	14	85			1.0
2091	88			11	0.923564
2092	87			12	0.992554
2134	78	21			1.0
2185	33		66		1.0
2235		45		54	1.0
2256	16			83	0.994512
2258		80		20	0.995493
2260	50			50	1.0
2261		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain