SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9056

Length: 676 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9056 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=3 Tax=rosids RepID=D7TP64_VITVI	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kelch-type beta propeller	IPR015915	-	0.0	78%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
291	90			10	0.90298
292	90		10		0.90298
295		90	10		0.90298
299	10		90		0.90298
301		10		90	0.90298
302	90	10			0.90298
306			10	90	0.90298
308		90		10	0.90298
310	10	90			0.90298
311		10		90	0.90298
313	10	90			0.90298
314	90	10			0.90298
333	44		55		1.0
339	44		55		1.0
343	55			44	1.0
347	44	55			1.0
348	55	44			1.0
350		44	55		1.0
353			55	44	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain