SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9052

Length: 938 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9052 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	leucine-rich repeat family protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	77%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 28 aas, your sequence is shorter than subject: 312 - 524

Fln protein: S*PWLSLSSFPNTLLCCYVNNAPLL*KSRSSVLLNTAADLNNFRD*TMDRALKAARASGSLNLSNRGLEEVPNQIYNDLDAVGEGEKWWEAVELQKLILAHNSIKALSEELGKLSSLTVLNISHNQLTCLPAAVGRLTMLKLLDVSFNSLIEIPEAIGSATALVKLHCASNKLTALPSSLGRCSELTELKASGNKLTALPDELMLCTKLMNLDVRDNKIAVLPDHLLSSCTMLTELNAANNFVSEIPESVGKLSRIVRLDLHQNRISSIPSSIAGCSSLAELYLGNNLLSSIPVEIGALSSLGTLDFHSNQL

Protein Length: 313

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCTTTCCCCAATACTCTTCTGTGTTGTTATGTCAATAATGCTCCATTGCTTTAAAAGAGCCGAAGTTCTGTCCTGTTGAATACTGCAGCAGATTTAAACAATTTCCGAGACTAGACGATGGATCGTGCACTGAAGGCTGCGAGGGCGTCCGGATCTCTTAATCTCTCGAATCGTGGGCTCGAGGAGGTGCCAAATCAGATTTACAATGATTTAGATGCAGTGGGAGAAGGAGAGAAGTGGTGGGAGGCTGTGGAGTTACAAAAGCTTATATTAGCTCACAACAGCATCAAGGCCTTGTCAGAGGAACTAGGAAAGCTCTCCTCTCTGACAGTTTTGAACATTAGCCATAATCAACTGACTTGTCTTCCAGCTGCTGTTGGCCGGCTTACCATGCTCAAACTATTAGATGTCTCTTTCAATTCATTAATCGAAATCCCTGAAGCGATTGGTTCAGCGACTGCACTGGTCAAATTGCACTGTGCGAGCAATAAACTAACTGCCCTACCTAGCAGTCTTGGGAGATGTTCAGAGCTAACAGAACTGAAGGCATCGGGCAATAAACTGACAGCATTACCAGATGAATTGATGCTCTGTACAAAGTTGATGAACTTGGATGTCAGGGATAATAAAATCGCAGTATTGCCTGACCATTTGCTGAGCTCCTGCACCATGCTTACTGAGCTGAATGCTGCCAACAACTTTGTCAGTGAGATACCTGAATCTGTTGGAAAACTTTCTCGAATTGTCCGTCTTGATCTTCATCAAAACCGAATTTCATCAATACCCTCATCAATTGCTGGATGCTCTTCACTTGCAGAGCTTTATCTAGGAAACAATCTTCTATCTTCAATTCCTGTGGAGATTGGAGCTCTTTCATCACTAGGGACGCTGGACTTCCATTCAAATCAGCTT

Fln Alignment:

sp_v1.1_unigene9052___LNLSNRGLEEVPNQI------------YNDLDAVGEGEKWWEAVELQKLILAHNSIKALSEELGKLSSLTVLNISHNQLTCLPAAVGRLTMLKLLDVS--FNSLIEIPEAIGSATALVKLHCASNKLTALPSSLGRCSELTELKASGNKLTALPDELML
B8LQU6______________LNISGNKLKSLPDSISMCSELIELDASYNQLTYLPTNFGY-QLANLQKLLVQLNKLRSLPSSVCELKSLRYLDVHFNELRSLPEALGDLKNLEVLNASSNFSDLVSLPDSIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
511	75		25		0.996473
512			25	75	0.996473
513	75	25			0.996473
514		25	75		0.996473
516			25	75	0.996473
518		25	75		0.996473
520			75	25	0.996473
526	25			75	0.996473
672		83	16		0.994512
674		83		16	0.994512
675		83	16		0.994512
678	16			83	0.994512
679			16	83	0.994512
683	16			83	0.994512
684	16	83			0.994512
685		83	16		0.994512
686			16	83	0.994512
690	11	88			0.923564
692		88	11		0.923564
856		16		83	0.994512
858		16		83	0.994512
859		16		83	0.994512
860	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain