SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9014

Length: 1158 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9014

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	intron maturase, type II family protein [Arabidopsis thaliana] dbj\|BAB10231.1\| unnamed protein product [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	rna binding	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Maturase MatK	IPR002866	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQE1

Fln msg: Overlapping hits, possible frame ERROR between 350 and 209, STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 385 - 696

Fln protein: GGEKVPSRSHCGVLSPLLANICLNELDHWMEEMITEIYCPSSTDVIWNDPVNSGSYNPSWPEFVPTSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGFPIEHVSRGVLFLDHIICRRVIYPTLRYTGSGGEIVSRKGVGTLLSVTASLERCISQFRKLKFVKGDRDPDPQPCSRMYFATQAHSNLQMNKFLETMAEWFRYADNRKKVTRFCSYIIRGSLAKLYAAKYKLHSRAKVYKAASRNLSRPLKEREGELPEYSELLRMGLIDAIHGINFTLSSLVPTTDYTPFPTNWMPEHERVLQEYIKVLTPKTFKEQRALLKQQGLITPQDYMSMLVWNFKMHGVFTDCTPTPETQSKQQKYIVQS

Protein Length: 386

Fln nts: GAGGAGGCGAGAAAGTCCCATCACGCAGCCATTGTGGAGTGTTGAGTCCTCTTCTTGCCAACATATGCCTCAATGAATTGGATCACTGGATGGAAGAAATGATTACTGAGATTTATTGCCCTTCAAGTACTGACGTTATATGGAACGATCCAGTCAATTCAGGGAGCTACAACCCTTCCTGGCCAGAATTCGTTCCAACCAGTGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCTTCCCAATAGAGCATGTTTCAAGAGGAGTCTTGTTCCTTGATCATATTATTTGCCGGCGTGTGATATATCCAACTTTGAGATACACTGGATCGGGTGGTGAGATTGTCAGTAGAAAAGGTGTGGGTACTCTGCTTTCTGTCACCGCCAGCTTGGAACGGTGCATTAGTCAATTCCGAAAACTAAAATTTGTCAAGGGTGACAGGGATCCTGATCCCCAGCCATGTTCTCGCATGTATTTTGCAACTCAAGCACACAGCAATTTACAAATGAACAAGTTTCTTGAAACCATGGCAGAATGGTTCAGATATGCAGACAACCGGAAGAAAGTAACTAGATTTTGCTCCTACATTATTCGTGGTTCTCTTGCAAAGCTCTATGCTGCAAAGTACAAGCTCCATTCTAGAGCCAAGGTTTACAAGGCCGCCTCACGCAATCTAAGTCGCCCATTAAAAGAGAGGGAGGGTGAGTTGCCAGAATACAGCGAGCTTTTAAGAATGGGACTAATTGATGCCATTCATGGCATTAATTTTACTCTCTCTTCTTTGGTGCCCACAACCGACTATACGCCCTTTCCAACTAACTGGATGCCAGAACACGAGAGAGTTTTACAGGAATATATAAAAGTGCTCACCCCGAAAACTTTTAAGGAACAGCGGGCCTTACTGAAGCAACAAGGGCTAATTACGCCACAGGATTACATGTCAATGTTGGTGTGGAACTTCAAAATGCATGGAGTATTTACGGATTGCACGCCAACTCCTGAAACACAGTCCAAACAGCAAAAATACATAGTTCAGTCTGG

Fln Alignment:

sp_v1.1_unigene9014___EKVPSRSHCGVLSPLLANICLNELDHWMEEMITEIYCPSSTDVIWNDPVNSGSYNPSWPEFVPTSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGFPIEHVSRGVLFLDHIICRRVIYPTLRYTGSGGEIVSRKGVGTLLSVTASLERCISQFRKLKFVKGDRDPDPQPCSRMYFATQAHSNLQMNKFLETMAEWFRYADNRKKVTRFCSYIIRGSLAKLYAAKYKLHSRAKVYKAASRNLSRPLKEREGELPEYSELLRMGLIDAIHGINFTLSSLVPTTDYTPFPTNWMPEHERVLQEYIKVLTPKTFKEQRALLKQQGLITPQDYMSMLVWNFKMHGVFTDCTPTPETQSKQQKYIVQS
B8LQE1______________EKVPSWGHCGVLSPLLANICLNELDHWMEERITEFYCPSSTDVIWNDPTNSGSYNPSWPEFVPTSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGFPIEHISRGVLFLDHIICRRVIYPTLRYTGSGGEIVSRKGVGTLLSVTASLERCISQFRKLKFVKGDRDPDPQPCSRMYFATQAHSNLQMNKFLETMAEWFRYADNRKKVIRFCSYIIRGSLAKLYAAKYKLRSRAKVYKAASRNLSRPLKEREGELPEYSELLRMGLIDAIHGINFTLSSLVPTTDYTPFPTNWMPEHERVLQEYIKVLTPKTFKEQRALLKQKGLITPQDYMSMLVWHFKMHGVFADCTPTPETQSKQQKYVTQS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
751		20		80	0.995493
764	14	85			0.993533
766	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain