SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9006

Length: 1364 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9006 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin MtN3 family protein	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RAG1-activating protein-1-related	IPR004316	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg:

Fln protein: MLVAHFIFGIFGNITALVLFLVPLFTFWKIIKKKSTEEFSGFPYVSTLLNCLLSAWYGLPFVSPNNTLVSTVNGTGAVLELCYVIVFLFYIRDKKYRVKIFGLLVSVLSFFALIALVSVLALHGHARKLFCGFAAAIFSICMYASPLSIMRTVIKTKSVEYMPFFLSLGVFLCGTSWFIYGLLGKDPFVSVPNGVGSALGAMQLILYAVYKDWKQNNTVTSSSPVKKEGKAGADMNAMEMGTCGQTSADNPSEKYVNGSESHYQIDQTYSTNR*

Protein Length: 275

Fln nts: CGTATGAGGGCCACCGGCCAATACACTTTGGATAGGCCCGGATATCCTTCTAGGAGGTTTATAAATAATTTGGTTTTCACAACGCCCCTCCATGCTAATGGTTGTGTTTGGTTTTCAGTAAGCTTCATTCATACCGTTGGAACCGGGCTATTATACTCAAAGCAAAGCTGCCAAA_-_ATGCTTGTTGCACATTTCATTTTCGGGATCTTCGGGAATATCACTGCCCTGGTACTCTTCTTAGTTCCCTTGTTTACCTTTTGGAAGATTATTAAGAAGAAATCGACGGAAGAGTTCTCTGGATTTCCTTATGTTTCTACACTTTTGAATTGCTTGCTTTCTGCATGGTATGGACTCCCGTTTGTATCGCCCAATAACACGCTCGTTAGCACGGTTAATGGAACTGGGGCTGTCCTTGAACTCTGCTACGTCATTGTGTTCCTCTTCTATATTCGAGACAAGAAATACAGGGTGAAAATATTTGGTCTTCTGGTAAGTGTGCTCTCGTTTTTTGCGCTGATCGCCCTGGTATCGGTCTTGGCGCTTCATGGACATGCAAGGAAGTTATTCTGTGGCTTTGCTGCTGCCATCTTCTCCATCTGCATGTATGCATCTCCTCTGTCTATAATGAGGACGGTGATTAAGACAAAAAGCGTAGAGTATATGCCATTCTTCCTGTCTCTTGGTGTTTTTCTTTGCGGCACATCCTGGTTTATCTACGGCCTACTGGGAAAGGATCCATTCGTTTCTGTACCAAATGGAGTGGGAAGTGCACTGGGAGCAATGCAGCTGATTCTGTACGCTGTTTACAAAGACTGGAAGCAAAATAACACTGTCACATCTTCTTCTCCTGTAAAGAAAGAAGGAAAGGCAGGGGCTGATATGAACGCAATGGAAATGGGAACTTGTGGGCAGACAAGCGCTGATAATCCTTCTGAAAAATATGTTAATGGTTCTGAAAGCCATTACCAAATAGACCAAACTTATAGCACCAACCGTTGA___GGATGAGGGAGGAAGAGTTTCACTCATGGCTTTCAAAGGATTTATGGTTATGAGTGTGCATATAAGCTGCTGTATTGAAACCAGCAGTAACCTGTTGCATGGGAGATGTGTAGCACAATGATTATGTTTGGGTTTATGGGCGTTCTGTGTGCTTTATTTTTCTGTGACAAAGGAGTTTGAACTCTAGCCCTTGCTTTAGTGTTTACAGAGTAAAATAGAGTGGAAAGGGGTTCTCTAAGGCGACTTATCCACATTGAGTCACGAGTAGGGAAAATACCTTATCCACATCGATTAGGGATTACAGCAAATGAAGTGACAATAATAAAATTATCCACATTGATTAATGATTACACTAAATGAAGTGACT

Fln Alignment:

sp_v1.1_unigene9006___MLVAHFIFGIFGNITALVLFLVPLFTFWKIIKKKSTEEFSGFPYVSTLLNCLLSAWYGLPFVSPNNTLVSTVNGTGAVLELCYVIVFLFYIRDKKYRVKIFGLLVSVLSFFALIALVSVLALHGHARKLFCGFAAAIFSICMYASPLSIMRTVIKTKSVEYMPFFLSLGVFLCGTSWFIYGLLGKDPFVSVPNGVGSALGAMQLILYAVYKDWKQNNTVTSSSPVKKEGKAGAD-MNAMEMGTCGQTSADNPSEKYVNG
A9NQ39______________MLIAHFIFGIFGNITALTLFLAPLITFWTIIKNKSTEQFSGFPYVSTLLNCLLSAWYGLPFVSPNNLLVSTVNGTGAAIELCYVIVFLFYIRDKKYRVKIFGLLVIVLKFFALVALVSLLALHGHARKLFCGFAAAIFSICMYASPLSIMRTVIKTKSVKYMPFFLSLCVFLCGTSWFIFGLLGKDPFLAVPNGVGSALGAMQLILYAVYKDWKKKDSNTWSPPVQEEGKAGADHMNAMEMGSYGQTEAHNPSGKYVNG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
162		66		33	1.0
401		11		88	0.923564
403		11	88		0.923564
414		88		11	0.923564
416	11		88		0.923564
430		11		88	0.923564
452		88		11	0.923564
660	90	10			0.90298
664			88	11	0.923564
688	83		16		0.994512
815	12		87		0.992554
833	87	12			0.992554
834	87	12			0.992554
835		12	87		0.992554
837		87		12	0.992554
1261	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain