SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8975

Length: 1401 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8975

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin d, putative	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	cyclin d2	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cyclin, N-terminal	IPR006671	-	0.0	67%
Blast2go	Cyclin-like	IPR013763	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Y7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 69 aas, putative chimeric sequence, your sequence is shorter than subject: 252 - 347

Fln protein: VVTLAVTQFCEEEEGFGIQHFPDFPVPDDDEIRVLVRKESQYMPAKSYVQSYQNLGLDFTARQNAIGWILKVHGSYNFGPLTAYLSINYLDRFLSRNPLPKAKVWMLQLLSVACLSLAAKMEETQVPLLLDLQAEEPDFLFEPRTIQRMELLVLSTLEWRMLSVTPFSFVDYFLQGGGGRKPPPRAMVARANELIFNTHTVLDFLEHRPSAIAAAACDLGSQAGFAPGSSPVQGDHPLLLSCRQGMGVRLL*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTGAGGAAGAAGAGGGTTTTGGGATTCAGCATTTCCCTGATTTCCCAGTTCCAGATGATGATGAAATAAGGGTCTTAGTGAGGAAGGAAAGCCAGTATATGCCTGCGAAGTCCTATGTACAGTCCTATCAGAACCTCGGACTGGATTTCACTGCAAGGCAAAACGCCATCGGATGGATTCTCAAGGTCCATGGCTCTTACAACTTTGGTCCACTGACTGCCTATCTGTCTATAAACTATCTAGATCGGTTTCTGTCCAGGAATCCACTACCGAAAGCCAAGGTCTGGATGCTGCAGCTCCTATCTGTGGCTTGCTTGTCTCTGGCTGCTAAAATGGAGGAAACCCAAGTTCCTTTACTACTGGACTTGCAGGCTGAAGAGCCCGACTTCCTCTTCGAGCCGCGTACTATCCAAAGAATGGAGCTTCTGGTTCTGAGCACTCTGGAATGGCGGATGCTCTCTGTTACACCGTTTTCGTTCGTCGATTACTTCTTGCAGGGTGGAGGGGGCAGGAAGCCACCGCCGAGAGCTATGGTGGCGCGAGCCAACGAGCTCATATTCAACACACACACAGTATTGGATTTCCTCGAGCACCGACCCTCTGCCATAGCTGCTGCAGCGTGTGACCTGGGCAGCCAAGCAGGTTTTGCCCCTGGAAGCAGCCCAGTACAAGGAGACCATCCTCTCCTGCTCTCTTGTAGACAAGGAATGGGTGTTCGGCTCTTATAA___TCTGATACAAGAAGTCCTGATTGAGAAATTCTCGACGCCTGAGAAGGCAAAATCAGCATCCTCCTCAATCCCGCAGAGCCCTGTTGGAGTGCTGGACGCCTTCTGTTTGAGCAACAACAGCAACAATACTTCACTGGAAGCTAGCTTAAGCGTTAACCTCTATGCCTCTGTGGCTGCCAAACGCAGGAAGCTCAACGATTACTGCAATACATGGCGAATGTTTCAGCACAGCACCTGTTAATCAAACATGAGATTGAAGGCCAAGGACTCAAAAACCAGTCCAGCATTTGTGTGCTGTTTTAGAGGGTTTTAATACTTCAAGTCCTCTGTAGAATTTGATACCTCTGGACGCTACAGTCATCAGGGATTTGATCTAATGCTAGTTTATTGATTTCTATGATCCAAGACCTCGTCATAGATCAGGTGCCTAGTTTATTGATTTTTATGACACAGTCGAAGCTTTTCTAAGCTTTTCTGAGACTCCTAACATATGTAACAACAGAATTCGTGAGCCAAGAGAATTTGTTGAATTCGTTCTCTATACTTATTTTGTAACTCTGGACGGACCAGTTAAATTATAAATGCTGGAAGTTTTGATCAATTATATTCAAAATCAAAAAAATTCCTGCGTTGAAGGTTCTGCA

Fln Alignment:

sp_v1.1_unigene8975___IQHFPDFPVPDDDEIRVLVRKESQYMPAKSYVQSYQNLGLDFTARQNAIGWILKVHGSYNFGPLTAYLSINYLDRFLSRNPLPKAKVWMLQLLSVACLSLAAKMEETQVPLLLDLQAEEPDFLFEPRTIQRMELLVLSTLEWRMLSVTPFSFVDYFLQGGGGRKPPPRAMVARANELIFNTHTVLDFLEHRPSAIAAAA
D5A9Y7______________LEGFPDLPTEDDESISFLVEKECDHMPQDGYLQRFQSRTLDVSVRQDGLSWILKVHAYYNFGPLTAYLAINYLDRFLSSYQMPQGKAWMLQLLSVSCLSLAAKMEETHVPLLLDLQIEDAKYVFEARTIERMELLILTTLKWRLRSITPFSFLHYFVHRAAGDQSPPRALITRSIELIVATIRVIHLVGHRPSSIAAAA

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
136		80	20		0.995493
247		85		14	0.993533
248			14	85	0.993533
250		85	14		0.993533
389	50	50			1.0
617		60		40	1.0
670			66	33	0.997452
671		33	66		0.997452
712		88	11		0.923564
970	88	11			0.999937
979		11	88		0.999937
1024		15	84		1.0
1026	84			15	1.0
1028			15	84	1.0
1029	5	77	16		1.0
1031	83	16			1.0
1032	83	16			1.0
1033	83			16	1.0
1034	83			16	1.0
1035		83	16		1.0
1037	82			17	1.0
1041	11	88			0.999952
1042	82	11		5	0.999919
1043		5	82	11	0.999919
1356	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain