SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8970

Length: 930 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8970 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar sorting receptor 1, putative n=1 Tax=Ricinus communis RepID=B9SRT1_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	vacuolar sorting receptor 1	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protease-associated domain, PA	IPR003137	-	0.0	79%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX7

Fln msg: Distance to subject end: 389 aas, your sequence is shorter than subject: 239 - 628

Fln protein: MEGANIGKGAVGFYVAVLLLMSSSALGRFVVEKNSINVITPESLTGKRQSAIGNFGVPDYGGSMIGKVVYPEKGRNGCKSFEELDVVFNKSESPSYPLFVLTDRGECYFALKVWNAQNAGAAAVLVADDRDEPLITMDSPEEDKAAAAYLDKISIPSALIEKSFGDDLKKALEKGELITIKLDWTESMPHPDDRVEYEFWTNSNDECGPKCDDQMDFVREFKGHAQILERVDTLYLLPI

Protein Length: 240

Fln nts: GATTAATTTCCATGGTTATGCATGCGGGCAGCGTGTCAATTTCATTGTATGCGTGTCCTTAAAGTTGTAGAGCAACAACACTGTCCACAGTGATGTTTAGTTGCTTCTCTTCTCTGAACAGTTTTGATTCTACCTAACATTAGCTTTCTCAAGGTGGGTATTGAGGATATCGAGAATTTAAGGGAGTCAAAGGCTTAAAAGAGAATTTGATA_-_ATGGAAGGGGCTAATATTGGTAAAGGGGCGGTGGGTTTTTATGTTGCTGTGCTATTGCTGATGAGCAGCAGTGCATTGGGTCGGTTTGTGGTTGAGAAGAACAGTATAAATGTGATAACTCCTGAATCATTGACAGGGAAGAGACAGAGTGCTATTGGAAATTTTGGTGTTCCAGATTATGGAGGGAGTATGATAGGTAAAGTGGTGTATCCAGAGAAAGGAAGAAATGGCTGCAAATCATTTGAGGAATTGGATGTTGTCTTCAACAAATCGGAGTCTCCATCATATCCCCTTTTTGTCTTGACAGATCGCGGAGAGTGCTACTTTGCATTGAAGGTATGGAATGCACAAAACGCCGGCGCTGCTGCTGTTCTTGTTGCAGATGACCGCGATGAGCCTCTCATAACTATGGATTCTCCTGAAGAAGACAAGGCAGCAGCTGCCTACCTTGACAAGATTTCAATTCCATCTGCCTTAATTGAGAAATCTTTTGGGGATGATCTGAAAAAGGCTTTGGAAAAGGGTGAACTCATAACCATTAAGCTTGATTGGACTGAATCCATGCCTCACCCAGATGACCGCGTAGAATATGAGTTCTGGACAAACAGCAACGATGAGTGTGGACCTAAATGTGATGATCAGATGGATTTTGTGAGAGAGTTCAAGGGCCATGCTCAAATATTAGAAAGGGTGGATACACTTTATTTACTCCCCATTA

Fln Alignment:

sp_v1.1_unigene8970___MEGANIGKGAVGFYXXXXXXXXXXXLGRFVVEKNSINVITPESLTGKRQSAIGNFGVPDYGGSMIGKVVYPEKGRNGCKSFEELDVVFNKSESPSYPLFVLTDRGECYFALKVWXXXXXXXXXXXXADDRDEPLITMDSPEEDKAAAAYLDKISIPSALIEKSFGDDLKKALEKGELITIKLDWTESMPHPDDRVEYEFWTNSNDECGPKCDDQMDFVREFKGHAQILER
B8LPX7______________MEGDNIGKGVVRFYVVVLLLMSSSVSGRFVVEKNSITVIAPYSLRGKRQSAIGNFGVPDYGGTMIGKVVYPEKGKDACKSFEEFGVSFNKSNSHSDPVFVLIDRGDCYFALKVWNAQNAGAAAVLVADDRDEPLITMDSPEEDKAAARYLDKISIPSALIEKSFGDDLKKVLEKDEVITIKLDWTESMPHPDDRVEYEFWTNSNDECGPRCDDQMDFVRKFKGHAQILEK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
711	14	85			0.993533
713		85	14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain