SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8960

Length: 2185 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8960
GCTCGCTGCCTCAGCTAGATGTTCTTGCGCTGTGGTCCAATAAGTTCCGTGGTAACATACCTGCAGAGCTGGGGTCGAGTAACAATCTATCGGCATTGGATCTCTCGGGGAATCTGCTCCACGGTTCGATTCCGGCGGGGCTCTGCAACTCGAAACGCCTTTACAAGCTTATACTGTTCAAGAACTTTCTCAGCGGACCCATTCCGGAAAGTCTGGCGAATTGTCAAACGTTGCGGCGTGTGCGCCTCGAGGAAAATTATCTTTCCGGTGATTTCCCTGTCGGTTTTACCCAGCTTCCCCTCGTTTATTATCTCGACGTTTCCTCGAATAACTTGAGCGGGAACGTGGATCGAATCCCCTGGCGTATGCCCTCGCTGCAAATGCTTCAGCTTCAAAGAAACCGGCTCAGTGGCAGCTTGCCACCCTCCATGGGAAAGCTCCGCAAGCTTGAAACCCTAGATCTCTCCAGTAACAGATTCAGTGGAGAGATTCCATCGGAGATGGGAGAGTTGGCCGAGCTCACTCAGTTGCATCTAAGTGGAAATCTATTGGAGGGCAGGATTCCTGAAGAGATCAGCAATTGCCTTAAATTAGTCGACATAGATCTGAGCAACAATAGGCTGGTGGGCGAAATTCCGGAAAAAATTGCCAGCATGCCAGTGTTGGGATCCCTTGATATTTCATCAAATTTTCTGACTGGAAAAGTCCCAGCAGATCTTGGCTCTGTGGAATCGCTGGTTTTTGTTAACATCTCCCACAATGACCTGCACGGCCCATTGCCTCTTACTGGAGCATTTGTGGAGATCAATTCTACAGCAGTGGAAGGTAACGAAAGGGTCTGTGGAGTCAGCCCGGGTGTGAAAAAATGCCCGGATTTGAGTTGGAGGCCTGGTTTGGAAGCCTCAATTGCTGTTTCTGTACTTTCATTTATTGCCATCTGCTCTGCATTGATATACTGTGCGCTTCGTCTCAGAAGCCGATCACAGCAGCTTAAGAAGGTCGAATCTGCAGAAGTTTCTCCTCCTGATTGTGGTAGCCATGGATTAGAACTTGTTTCCTTTAATAAAAAGCATCCATTTTCAGTGGAAGAAGTTATGAACGCCATGAAAGAGGAGAATGTCATTGCTAAGGGAAGCAGTGGGACACTATACAGAGGATTCACCAAGAAAGGAAAGAATGCTAGCTGTCAAGGAGTTGGCATTTGGCTTTGATCCAGATCACGTCCAGAACTTGGGCAAATTGCACCATCCACATGTTGTGAAAATACTTGGATATTGTAAAAATGCTACTGGCACCGGACTGCTAATTATTTATGAGTACATGGAGAATGGTACTCTACATGGGCTTCTTCATGAAGGCATTGGGTTCAAGAATCTAGATTGGCGAAGACGACTTAAGATCGCCTCTGGAACTGCAAAAGCCTTGGCATATTTGCACCATGAATGCAACCCTGGGATTCTGCACGGGAACGTTACTTCAAGCAAAATTCTTCTGGATGCAGACTATGGTGCTCATCTCAGCCCTAATCTCAAGTTCTCTGCTGGACCTTCAGCTTCCAAGGATTCCAAGGGATATCTTTCCTCCGGCTATGTTGCTCCAGAGTATATCTATGCAAACGGATTCACAGAGAAGACGGATGTGTATAGCTTTGGTGTTTTCCTGATAGAGTTGCTCACAGGAAAAAGGCCAATTGAGCCGGAATTTGGAGAGCATGCAAGTATTGTAGACTGGGCACATGCACTATACGCAGAATGGGATTGCAGCCGGTTGCTCGATCCAGTCCTCTCAGAATCTACACCTGTTTATCAAGCTGAGATGATGCGAGTTATGAATCTTTCTATCCGCTGTACATCAGTCTCTCCTGCACTGCGACCCACCATGCGCGAGGTGGTGCAGATTCTTAAAAGTGTTCGTAAGCCTGGAATTGGGCTTGGATGTTCTTAATTGCTTCTCTATTTCGCTAAGAAAATTAAGATTAGAATACGATTGACCGTGTATTAGATATGGCAGGATAATTTAATTTCTGTGATGGGAATGTAATTTCATGATTTTAAAAGCCTGTGTAAAATATAGTTGGCAGGTGTATATGTAAGGAAGCTGTGGACATGCCACTAGAATTCTATGGTTCAGCGGCTCCACTCAATGGATCTAAGTTATAATAATAACAAGTGTCTTTTATATATTC

Ace file of the UniGene sp_v1.1_unigene8960

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9RRZ6_RICCO	-	-	49%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	33%
Blast2go	receptor protein kinase clavata1	-	-	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	58%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	58%
Blast2go	Metabolic pathways	01100		0.0	58%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	58%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	58%
Blast2go	gametophyte development	GO:0048229	Biological Process	58%
Blast2go	starch catabolic process	GO:0005983	Biological Process	58%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	58%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	58%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	58%
Blast2go	cytosol	GO:0005829	Cellular Component	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	58%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 270 aas, putative chimeric sequence, your sequence is shorter than subject: 403 - 998

Fln protein: SLPQLDVLALWSNKFRGNIPAELGSSNNLSALDLSGNLLHGSIPAGLCNSKRLYKLILFKNFLSGPIPESLANCQTLRRVRLEENYLSGDFPVGFTQLPLVYYLDVSSNNLSGNVDRIPWRMPSLQMLQLQRNRLSGSLPPSMGKLRKLETLDLSSNRFSGEIPSEMGELAELTQLHLSGNLLEGRIPEEISNCLKLVDIDLSNNRLVGEIPEKIASMPVLGSLDISSNFLTGKVPADLGSVESLVFVNISHNDLHGPLPLTGAFVEINSTAVEGNERVCGVSPGVKKCPDLSWRPGLEASIAVSVLSFIAICSALIYCALRLRSRSQQLKKVESAEVSPPDCGSHGLELVSFNKKHPFSVEEVMNAMKEENVIAKGSSGTLYRGFTKKGKNASCQGVGIWL*

Protein Length: 404

Fln nts: GCTCGCTGCCTCAGCTAGATGTTCTTGCGCTGTGGTCCAATAAGTTCCGTGGTAACATACCTGCAGAGCTGGGGTCGAGTAACAATCTATCGGCATTGGATCTCTCGGGGAATCTGCTCCACGGTTCGATTCCGGCGGGGCTCTGCAACTCGAAACGCCTTTACAAGCTTATACTGTTCAAGAACTTTCTCAGCGGACCCATTCCGGAAAGTCTGGCGAATTGTCAAACGTTGCGGCGTGTGCGCCTCGAGGAAAATTATCTTTCCGGTGATTTCCCTGTCGGTTTTACCCAGCTTCCCCTCGTTTATTATCTCGACGTTTCCTCGAATAACTTGAGCGGGAACGTGGATCGAATCCCCTGGCGTATGCCCTCGCTGCAAATGCTTCAGCTTCAAAGAAACCGGCTCAGTGGCAGCTTGCCACCCTCCATGGGAAAGCTCCGCAAGCTTGAAACCCTAGATCTCTCCAGTAACAGATTCAGTGGAGAGATTCCATCGGAGATGGGAGAGTTGGCCGAGCTCACTCAGTTGCATCTAAGTGGAAATCTATTGGAGGGCAGGATTCCTGAAGAGATCAGCAATTGCCTTAAATTAGTCGACATAGATCTGAGCAACAATAGGCTGGTGGGCGAAATTCCGGAAAAAATTGCCAGCATGCCAGTGTTGGGATCCCTTGATATTTCATCAAATTTTCTGACTGGAAAAGTCCCAGCAGATCTTGGCTCTGTGGAATCGCTGGTTTTTGTTAACATCTCCCACAATGACCTGCACGGCCCATTGCCTCTTACTGGAGCATTTGTGGAGATCAATTCTACAGCAGTGGAAGGTAACGAAAGGGTCTGTGGAGTCAGCCCGGGTGTGAAAAAATGCCCGGATTTGAGTTGGAGGCCTGGTTTGGAAGCCTCAATTGCTGTTTCTGTACTTTCATTTATTGCCATCTGCTCTGCATTGATATACTGTGCGCTTCGTCTCAGAAGCCGATCACAGCAGCTTAAGAAGGTCGAATCTGCAGAAGTTTCTCCTCCTGATTGTGGTAGCCATGGATTAGAACTTGTTTCCTTTAATAAAAAGCATCCATTTTCAGTGGAAGAAGTTATGAACGCCATGAAAGAGGAGAATGTCATTGCTAAGGGAAGCAGTGGGACACTATACAGAGGATTCACCAAGAAAGGAAAGAATGCTAGCTGTCAAGGAGTTGGCATTTGGCTTTGA___TCCAGATCACGTCCAGAACTTGGGCAAATTGCACCATCCACATGTTGTGAAAATACTTGGATATTGTAAAAATGCTACTGGCACCGGACTGCTAATTATTTATGAGTACATGGAGAATGGTACTCTACATGGGCTTCTTCATGAAGGCATTGGGTTCAAGAATCTAGATTGGCGAAGACGACTTAAGATCGCCTCTGGAACTGCAAAAGCCTTGGCATATTTGCACCATGAATGCAACCCTGGGATTCTGCACGGGAACGTTACTTCAAGCAAAATTCTTCTGGATGCAGACTATGGTGCTCATCTCAGCCCTAATCTCAAGTTCTCTGCTGGACCTTCAGCTTCCAAGGATTCCAAGGGATATCTTTCCTCCGGCTATGTTGCTCCAGAGTATATCTATGCAAACGGATTCACAGAGAAGACGGATGTGTATAGCTTTGGTGTTTTCCTGATAGAGTTGCTCACAGGAAAAAGGCCAATTGAGCCGGAATTTGGAGAGCATGCAAGTATTGTAGACTGGGCACATGCACTATACGCAGAATGGGATTGCAGCCGGTTGCTCGATCCAGTCCTCTCAGAATCTACACCTGTTTATCAAGCTGAGATGATGCGAGTTATGAATCTTTCTATCCGCTGTACATCAGTCTCTCCTGCACTGCGACCCACCATGCGCGAGGTGGTGCAGATTCTTAAAAGTGTTCGTAAGCCTGGAATTGGGCTTGGATGTTCTTAATTGCTTCTCTATTTCGCTAAGAAAATTAAGATTAGAATACGATTGACCGTGTATTAGATATGGCAGGATAATTTAATTTCTGTGATGGGAATGTAATTTCATGATTTTAAAAGCCTGTGTAAAATATAGTTGGCAGGTGTATATGTAAGGAAGCTGTGGACATGCCACTAGAATTCTATGGTTCAGCGGCTCCACTCAATGGATCTAAGTTATAATAATAACAAGTGTCTTTTATATATTC

Fln Alignment:

sp_v1.1_unigene8960___SLPQLDVLALWSNKFRGNIPAELGSSNNLSALDLSGNLLHGSIPAGLCNSKRLYKLILFKNFLSGPIPESLANCQTLRRVRLEENYLSGDFPVGFTQLPLVYYLDVSSNNLSGNVDRIPWRMPSLQMLQLQRNRLSGSLPPSMGKLRKLETLDLSSNRFSGEIPSEMGELAELTQLHLSGNLLEGRIPEEISNCLKLVDIDLSNNRLVGEIPEKIASMPVLGSLDISSNFLTGKVPADLGSVESLVFVNISHNDLHGPLPLTGAFVEINSTAVEGNERVCG--VSPGVKKCPD--------LSWRPGLEASIAVSVLSFIAICSALIYCALRLRSRSQQLKKVESAEVSPPDCGSHGLELVSFNKKHPFSVEEVMNAMKEENVIAKGSSGTLYRGFTKKGK
Q19AV8______________SFASLTELKLFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSIFNNVFAGNIPESLGTCTSLNRVRLGGNKFNGSVPSSFWGLPHISLLELKDNNFEGLISPDIANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTF-DVSNNRLSGAVPLAFA-NPVYEKSFLGNPELCSREAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFV-LGLAWFYRRYRNFANAERKKSVDKS----------SWMLTSFHRLR-FSEYEILDCLDEDNVIVSDGASNVYKATLNNGE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
593		25		75	0.996473
853	16		83		0.994512
854		83		16	0.994512
855		80	20		0.995493
856		80	20		0.995493
1164	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain