SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8959

Length: 1700 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8959

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	enoyl-CoA hydratase/isomerase family protein; K05605 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	58%

Source	KEGGs	Term	Identity
AutoFact	Valine, leucine and isoleucine degradation	00280	58%
AutoFact	beta-Alanine metabolism	00410	58%
AutoFact	Propanoate metabolism	00640	58%
AutoFact	Metabolic pathways	01100	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Crotonase, core	IPR001753	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVZ0

Fln msg:

Fln protein: MAAPMAEGKPESQAPQDVLDEEKGRVRVITLNNPRKLNIISREVVIRLAEIYEKWEKENNVEMIIMKGAGRAFSAGGDLRVFYYGKADKHVIEAVYKMYWLQYHIHTYKKTVVAIVNGLAIGGGASLTLASTFKVVTEKTVLSAPEAGFGFHTDASLSYVLSHLPGHLGEYLALTGARLDGVEMISTGLGTHYIPSEKLEELEKRLVDLKSGDRNIVRAAIDEFSLQVHLGEKSILHKRSLIDKCFSNDTVEEIIEALTTESNMEGNEWIKDTIQNLKRSSPTGLKMTLRSVRQARKQTLLECLKKEFRLTVNTLRGVISKDIYEGIRALVIDKDNSPKWNPPSLSEVTEEKLDLVFNPLEEEFEIQLPQEERISRWGGKFECSGFHVE*

Protein Length: 391

Fln nts: ATGGTGGCGACCTGACCGTCGCCCACACGCAAGTCTTATTTGTCATGCTTGTCTTGACTTCTACCAACAACCCCCTGACCTTTTCATACAAAATTCATGACAGTACAACAATTTCACAGCCCTTTTTGCAAGTTCTAAGGAGACTCCTTCACACCATTTTTAGGCCAATTCATTACATCTCTGGTTCTTCTTGCTGCAAGTAATTTGAGTGGAGAACATTTGGAATTTGTGCTGGTTTAAAGGCTTAT_-_ATGGCAGCTCCAATGGCAGAGGGCAAACCTGAATCTCAAGCTCCTCAGGATGTCCTAGATGAAGAGAAAGGTCGTGTACGAGTTATCACTCTTAATAACCCACGTAAACTGAATATCATTAGCAGGGAAGTGGTAATCCGATTAGCTGAGATCTACGAGAAATGGGAGAAAGAAAATAACGTGGAGATGATAATCATGAAGGGAGCTGGGCGAGCATTTTCTGCTGGGGGAGACTTGAGGGTATTTTATTATGGCAAGGCAGACAAACATGTTATCGAGGCTGTATACAAAATGTATTGGCTTCAGTATCATATCCATACATACAAGAAAACTGTGGTAGCAATTGTTAATGGACTTGCAATTGGAGGAGGTGCAAGTCTAACATTAGCATCCACTTTTAAAGTAGTCACAGAGAAAACTGTCTTATCAGCGCCTGAGGCTGGCTTTGGATTTCACACCGATGCCAGTCTCTCGTACGTTCTTTCACATCTTCCAGGACATCTTGGGGAGTATCTGGCCTTAACAGGTGCACGACTTGATGGTGTGGAAATGATTTCAACTGGTCTCGGCACTCATTATATTCCATCAGAGAAATTGGAAGAATTGGAGAAACGCTTGGTTGATTTGAAGTCTGGAGATAGGAACATTGTCAGAGCAGCAATTGATGAATTTTCGCTTCAAGTCCATCTTGGGGAGAAAAGTATCTTGCATAAACGTTCTTTGATTGACAAATGCTTCTCCAACGATACCGTAGAAGAGATCATAGAAGCTTTAACAACAGAGAGCAATATGGAGGGCAATGAATGGATTAAAGACACTATTCAGAATCTAAAGAGATCTTCTCCGACTGGTTTGAAGATGACATTACGATCGGTTAGACAAGCACGCAAACAAACACTCCTTGAATGCCTTAAAAAGGAGTTCCGTCTCACCGTAAACACGTTGAGAGGAGTAATATCCAAAGATATCTATGAGGGTATCCGAGCTCTGGTTATTGATAAAGATAATTCTCCCAAGTGGAATCCTCCTTCTTTAAGTGAAGTCACTGAAGAAAAGCTAGACTTGGTCTTTAATCCACTTGAAGAGGAATTTGAAATACAGCTACCACAAGAGGAGAGAATATCAAGGTGGGGAGGCAAATTTGAATGTTCAGGCTTCCATGTAGAATAA___CTTTGCCACCTCTACCATGAAAATTTGATTTGTTTTGACTAAGTAATGCCCAAGCTTGAGGCTCAATTATAACTTCCACTATTGTGAACTGCAGTCAGGCAAATATGCAAAGAATTTTATAAATATAGTAGAAAAGGATATCCCTTTTCCAAAATGGCAATATTACATGAGATGGTACATCATATTTACAACAAAGTGCTTTACACTTAAGCCTGAGTTTTAGTAAGGGTTGTAATGCACTGTATGTCAACATTTTATTAAAAAACTCCTTTGTCAAGATCC

Fln Alignment:

sp_v1.1_unigene8959___MAAPMAEGKPESQAPQDVLDEEKGRVRVITLNNPRKLNIISREVVIRLAEIYEKWEKENNVEMIIMKGAGRAFSAGGDLRVFYYGKADKHVIEAVYKMYWLQYHIHTYKKTVVAIVNGLAIGGGASLTLASTFKVVTEKTVLSAPEAGFGFHTDASLSYVLSHLPGHLGEYLALTGARLDGVEMISTGLGTHYIPSEKLEELEKRLVDLKSGDRNIVRAAIDEFSLQVHLGEKSILHKRSLIDKCFSNDTVEEIIEALTTESNMEGNEWIKDTIQNLKRSSPTGLKMTLRSVRQARKQTLLECLKKEFRLTVNTLRGVISKDIYEGIRALVIDKDNSPKWNPPSLSEVTEEKLDLVFNXXXXXXXXXXXXXXRISRWGGKFECSGFHVE
A9NVZ0______________MASPMADSKPGSQPSQVVLDEEKGRVRVVTLNNPRKLNIISREVVIRLTEIYEKWEKENDAEMIIIKGAGRAFSAGGDLRVFYYGKADKHVIEAVYKMYWLQYHIHTYKKTLVAIVNGLAIGGGASITVASTFKVVTEKTVLSAPEAGFGFHTDASLSYILSHLPGHLGEYLALTGARLDGAEMIATGLGTHYIPSEKLEDLEKRLVDLNSGDRNIVRAAMEEFSLQVQPGEKSILYNRSLIAKCFSKDTVEEIIETLIAENNMEGNEWVKDTIQNLKRSSPTGLKMTLRSVRQARKQTLSECLKKEFRLTINTLRGVISNDIYEGMRALVIDKDNSPKWNPP-LSEVTEEKLDLVFSSFEEEFELQLPQEEKISRWEGKFECSGFHLE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
171	80			20	0.995493
187	10		90		0.90298
189			10	90	0.90298
190		90	10		0.90298
191			10	90	0.90298
192			10	90	0.90298
444	83		16		0.994512
560		12		87	0.992554
896	11	88			0.923564
1041	90		10		0.90298
1042			10	90	0.90298
1123			14	14	0.984337
1124			12	87	0.992554
1125		87	12		0.992554
1383	12		87		0.992554
1478	16	83			0.994512
1564		16		83	0.994512
1697		33		66	0.997452
1701	33		66		0.997452
1703	33			66	0.997452
1704	33	66			0.997452
1705	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain