SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8906

Length: 792 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8906 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ZAC; ZAC; ARF GTPase activator/ phospholipid binding	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	zac arf gtpase activator phospholipid binding	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	phospholipid binding	GO:0005543	Molecular Function	85%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	85%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Arf GTPase activating protein	IPR001164	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
737	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
734	747	AATT AATT AATT AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain