SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8894

Length: 845 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8894

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Abc transporter family protein n=2 Tax=Arabidopsis RepID=D7LIF8_ARALY	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	atp-binding cassette transporter	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	74%
Blast2go	Thiamine metabolism	00730	74%
Blast2go	Metabolic pathways	01100	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter-like	IPR003439	-	74%
Blast2go	AAA+ ATPase domain	IPR003593	-	74%
Blast2go	ABC transporter, conserved site	IPR017871	-	74%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
298		20		80	0.995493
356	80	20			0.995493
359			80	20	0.995493
360		80		20	0.995493
361	20	80			0.995493
362	20	80			0.995493
363	20		80		0.995493
366	80	20			0.995493
371	20		80		0.995493
373	80		20		0.995493
377		80		20	0.995493
380		20		80	0.995493
381	20		80		0.995493
382			80	20	0.995493
383	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain