SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8889

Length: 2526 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene8889
GCATATACCCGCGTCATTAGGGTATCTTGAACAATTATACTGGTTAGACATTGCGGATAACGAAATAAGCGGACAACTGCCGGTTTCCAGTGGAACTATGCCCGGGTTGGACAAACTATCCAGCGCCAAACACTTCCACTTCAATAAAAATCGACTGAATGGCCCAATTCCAAGCGAAATTTTCAATCCGAACATGCAGCTAATTCACGTACTGTTTGATAGCAATCTTATTACGGGGAGATTCCTGATACTGTGGCTATGGTATCAACATTGGAGGTCCTGAGGCTTGATCGAAATTCTTTGATTGGTTCCGTTCCGTCGCTGAACAATCTGACAAAAATCAATCAACTGCACCTGGAACACAATCGACTGGAAGGCCCTTTACCGGACTTATCCACGATGAACAGTCTGGCTTACGTAGACATGAGCAACAATTCATTTGACGAATCAGAAGCTCCAGAATGGTTTATGAAACTAGAATCCTTAACGACGCTCGTCATAGAAAACGGAAGGTTAGAAGGTTCGGTTCCTCAAGACCTATTTAGCTTGCCTCAACTTCAGACTGTGAAACTGGGACACAACCTTTTCAACATGTCTCTCTCTATGGGCACCAACATAGGTCCGCAGCTTCAATTGGTGAATCTGGAATTCAACCAGATCCCTGATGCTAGCTTGGGAAAGTTCTACAATAAAACTTTACTGCTGCTGGGGAACCCGGTTTGTGATAGTGGCAGTTTCTTGTCAAATAACAAAGTATGTCAACCTTCAGCGATGGAGTTATCATACTCTACTTCATCAAACTGTAGCATAAAATCGTGCAAGACTGCAGAGCAAAAGGTAAATCCTCAGACCTGTGAATGCCAAGTCCCTTTTACGGGCGAAATGGTGTTCAGGGCTCCGTCATTTTCAGATCTGTCCACCGCTTCCAGTTCCAGGTTCAGGGAGCTAGAGGCTTCAATATGGCAGAATCTAAGCCTTGCTCCAGGCTATGTATACATTTGCTGCCTTCATTTTGACGATAACAACTACCTCAATATCCAATTACAACTTTACCCTACGGACGGCAAGTATTTTACTCGAAAAGAAATTCAGAGGATTGGGTTCGCTCTGAGCAAGCAAGCGTACAAACCACCCCACGAATTCGGACCCTTTTTCTTCCTGGCAGACCTATACATTTTTCCCGATAACAGCAGATCGACCAGCTTGAACTCGGCTGTAATTATTGGTATAGCCACTGGTGCGGCGCTTTTGGCACTTGCCATTCTTGGTGTGACTTTTTACGCTTTAAGGCAGAAGCAAAGAGCTGATCAGGCGATCGAATTAAGCAAACCGTTCGTTTCTTGGGGAACAAGCGGTCCGGATAGTGGTGGCGCTCCCAAACTCAAAGGGGCCAGATGGTTTTCATGTCAAGAGCTTAAGAAGTCTACCAATAACTTCGACGACGCTCATGAGATTGGTTCAGGAGGCTATGGAAAGGTGTATAAGGGAATCTTGCCTGGTGCAGGTGAACTGGTAGCTATTAAAAGAGCGCAACGAGGGTCTCTGCAAGGTGGGGCTGAATTTAAGAACGAGATTGAGCTGCTGTCTCGGGTTCATCACAAGAACCTCGTGGGACTCATTGGCTTCTGTTTTGAGCAAGGAGAGCAGATGCTAGTTTACGAATACATGTCAAATGGTAGTCTTCAGGATAGTCTCTCTGGTAAAAGTGGTATTCATTTGGATTGGCGAAGGAGGATTCGTGTAGCATTGGGTTCAGCTAAGGGCTTAAGCTATCTGCATGAGCTTGCCTATCCGCCTATAATTCACAGAGATGTTAAGTCAACCAACATCTTGTTGGACGACAATCTGATAGCCAAGGTAGCAGACTTTGGACTATCGAAACTCGTTACAGACGGGGGTATTGATGAAGGGGGCAAAGGCCATGTGTCCACCCAAGTAAAAGGAACAATGGGCTATCTGGATCCAGAGTACTATATGACGCACCAGCTAAGTGAGAAGAGTGATGTATATAGTTTCGGCGTCGTATTACTTGAAATCTTAACAGCACGACGGCCTATTGAACGAGGAAAATACATAGTTCGTGAAGTTAAAAGCGCCTTGGATACCGGTGGAATTGGTGCGCTAGTTAGCGAATTAGTTGATCCCCTGCTACTCGGATCAGACTCACACGGTACTCTTCTTCCAGGCCTTGAAAGCTTTGTGAACCTCGCGTTGAAGTGCGCCGAGGAATCTGCTGCAGATCGACCGAGCATGAGTGATGCAGTGAAGGAGCTGGAATCGATTGCCACCAACTGCAAGGATGACGATGGGCCATACAACAACTCATCTGCATCATCTCTGGCCAGTGATTCCGGTGCCATCAACATTAAAGGCTTTTATTATACTCAGTCTAGTAATTATACTTCAGACGATGGCATTCTCAAGAAGGGTGGCTCCTTTGAGTATAGTGGCGGATATTCAGTGCGTCACACCGTGGAGCCCAAGTGATCTATTTCACCACATTCACTTTCTATCATTATATGATTG

Ace file of the UniGene sp_v1.1_unigene8889

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	receptor protein kinase, putative (EC:2.7.11.25 1.3.1.74)	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	receptor protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	70%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	70%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	70%
Blast2go	Protein kinase-like domain	IPR011009	-	70%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	70%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	70%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9B2

Fln msg: your sequence is longer than subject: 743 - 338

Fln protein: MVSTLEVLRLDRNSLIGSVPSLNNLTKINQLHLEHNRLEGPLPDLSTMNSLAYVDMSNNSFDESEAPEWFMKLESLTTLVIENGRLEGSVPQDLFSLPQLQTVKLGHNLFNMSLSMGTNIGPQLQLVNLEFNQIPDASLGKFYNKTLLLLGNPVCDSGSFLSNNKVCQPSAMELSYSTSSNCSIKSCKTAEQKVNPQTCECQVPFTGEMVFRAPSFSDLSTASSSRFRELEASIWQNLSLAPGYVYICCLHFDDNNYLNIQLQLYPTDGKYFTRKEIQRIGFALSKQAYKPPHEFGPFFFLADLYIFPDNSRSTSLNSAVIIGIATGAALLALAILGVTFYALRQKQRADQAIELSKPFVSWGTSGPDSGGAPKLKGARWFSCQELKKSTNNFDDAHEIGSGGYGKVYKGILPGAGELVAIKRAQRGSLQGGAEFKNEIELLSRVHHKNLVGLIGFCFEQGEQMLVYEYMSNGSLQDSLSGKSGIHLDWRRRIRVALGSAKGLSYLHELAYPPIIHRDVKSTNILLDDNLIAKVADFGLSKLVTDGGIDEGGKGHVSTQVKGTMGYLDPEYYMTHQLSEKSDVYSFGVVLLEILTARRPIERGKYIVREVKSALDTGGIGALVSELVDPLLLGSDSHGTLLPGLESFVNLALKCAEESAADRPSMSDAVKELESIATNCKDDDGPYNNSSASSLASDSGAINIKGFYYTQSSNYTSDDGILKKGGSFEYSGGYSVRHTVEPK*

Protein Length: 744

Fln nts: GCATATACCCGCGTCATTAGGGTATCTTGAACAATTATACTGGTTAGACATTGCGGATAACGAAATAAGCGGACAACTGCCGGTTTCCAGTGGAACTATGCCCGGGTTGGACAAACTATCCAGCGCCAAACACTTCCACTTCAATAAAAATCGACTGAATGGCCCAATTCCAAGCGAAATTTTCAATCCGAACATGCAGCTAATTCACGTACTGTTTGATAGCAATCTTATTACGGGGAGATTCCTGATACTGTGGCT_-_ATGGTATCAACATTGGAGGTCCTGAGGCTTGATCGAAATTCTTTGATTGGTTCCGTTCCGTCGCTGAACAATCTGACAAAAATCAATCAACTGCACCTGGAACACAATCGACTGGAAGGCCCTTTACCGGACTTATCCACGATGAACAGTCTGGCTTACGTAGACATGAGCAACAATTCATTTGACGAATCAGAAGCTCCAGAATGGTTTATGAAACTAGAATCCTTAACGACGCTCGTCATAGAAAACGGAAGGTTAGAAGGTTCGGTTCCTCAAGACCTATTTAGCTTGCCTCAACTTCAGACTGTGAAACTGGGACACAACCTTTTCAACATGTCTCTCTCTATGGGCACCAACATAGGTCCGCAGCTTCAATTGGTGAATCTGGAATTCAACCAGATCCCTGATGCTAGCTTGGGAAAGTTCTACAATAAAACTTTACTGCTGCTGGGGAACCCGGTTTGTGATAGTGGCAGTTTCTTGTCAAATAACAAAGTATGTCAACCTTCAGCGATGGAGTTATCATACTCTACTTCATCAAACTGTAGCATAAAATCGTGCAAGACTGCAGAGCAAAAGGTAAATCCTCAGACCTGTGAATGCCAAGTCCCTTTTACGGGCGAAATGGTGTTCAGGGCTCCGTCATTTTCAGATCTGTCCACCGCTTCCAGTTCCAGGTTCAGGGAGCTAGAGGCTTCAATATGGCAGAATCTAAGCCTTGCTCCAGGCTATGTATACATTTGCTGCCTTCATTTTGACGATAACAACTACCTCAATATCCAATTACAACTTTACCCTACGGACGGCAAGTATTTTACTCGAAAAGAAATTCAGAGGATTGGGTTCGCTCTGAGCAAGCAAGCGTACAAACCACCCCACGAATTCGGACCCTTTTTCTTCCTGGCAGACCTATACATTTTTCCCGATAACAGCAGATCGACCAGCTTGAACTCGGCTGTAATTATTGGTATAGCCACTGGTGCGGCGCTTTTGGCACTTGCCATTCTTGGTGTGACTTTTTACGCTTTAAGGCAGAAGCAAAGAGCTGATCAGGCGATCGAATTAAGCAAACCGTTCGTTTCTTGGGGAACAAGCGGTCCGGATAGTGGTGGCGCTCCCAAACTCAAAGGGGCCAGATGGTTTTCATGTCAAGAGCTTAAGAAGTCTACCAATAACTTCGACGACGCTCATGAGATTGGTTCAGGAGGCTATGGAAAGGTGTATAAGGGAATCTTGCCTGGTGCAGGTGAACTGGTAGCTATTAAAAGAGCGCAACGAGGGTCTCTGCAAGGTGGGGCTGAATTTAAGAACGAGATTGAGCTGCTGTCTCGGGTTCATCACAAGAACCTCGTGGGACTCATTGGCTTCTGTTTTGAGCAAGGAGAGCAGATGCTAGTTTACGAATACATGTCAAATGGTAGTCTTCAGGATAGTCTCTCTGGTAAAAGTGGTATTCATTTGGATTGGCGAAGGAGGATTCGTGTAGCATTGGGTTCAGCTAAGGGCTTAAGCTATCTGCATGAGCTTGCCTATCCGCCTATAATTCACAGAGATGTTAAGTCAACCAACATCTTGTTGGACGACAATCTGATAGCCAAGGTAGCAGACTTTGGACTATCGAAACTCGTTACAGACGGGGGTATTGATGAAGGGGGCAAAGGCCATGTGTCCACCCAAGTAAAAGGAACAATGGGCTATCTGGATCCAGAGTACTATATGACGCACCAGCTAAGTGAGAAGAGTGATGTATATAGTTTCGGCGTCGTATTACTTGAAATCTTAACAGCACGACGGCCTATTGAACGAGGAAAATACATAGTTCGTGAAGTTAAAAGCGCCTTGGATACCGGTGGAATTGGTGCGCTAGTTAGCGAATTAGTTGATCCCCTGCTACTCGGATCAGACTCACACGGTACTCTTCTTCCAGGCCTTGAAAGCTTTGTGAACCTCGCGTTGAAGTGCGCCGAGGAATCTGCTGCAGATCGACCGAGCATGAGTGATGCAGTGAAGGAGCTGGAATCGATTGCCACCAACTGCAAGGATGACGATGGGCCATACAACAACTCATCTGCATCATCTCTGGCCAGTGATTCCGGTGCCATCAACATTAAAGGCTTTTATTATACTCAGTCTAGTAATTATACTTCAGACGATGGCATTCTCAAGAAGGGTGGCTCCTTTGAGTATAGTGGCGGATATTCAGTGCGTCACACCGTGGAGCCCAAGTGA___TCTATTTCACCACATTCACTTTCTATCATTATATGATTG

Fln Alignment:

sp_v1.1_unigene8889___FYALRQKQRADQAIELSKPFVSWGTSGPDSGGAPKLKGARWFSCQELKKSTNNFDDAHEIGSGGYGKVYKGILPGAGELVAIKRAQRGSLQGGAEFKNEIELLSRVHHKNLVGLIGFCFEQGEQMLVYEYMSNGSLQDSLSGKSGIHLDWRRRIRVALGSAKGLSYLHELAYPPIIHRDVKSTNILLDDNLIAKVADFGLSKLVTDGGIDEGGKGHVSTQVKGTMGYLDPEYYMTHQLSEKSDVYSFGVVLLEILTARRPIE-RGKYIVREVKSALDTGGIGALVSELVDPLLLGSDSHGTLLPGLESFVNLALKCAEESAADRPSMSDAVKELESIATNCKDDDGPYN
D5A9B2______________FYASKRKKRA---------------RSPDDVCVLNIKCPRRFSSEELRRVTNDFSNTNVIGIGGCGRVYKAMLDD-GQVVAIKRGEQGSMLWKVGFRSEIELLSRFHHNNVLDLIGFCVERGERMLVYNYIPNGSVNDILLGKKEIQLDWGSRVRIALGSARALEYLHYDVNPRVIHRNIKSTNILVDDYLTAKVAHFDLAKILPYGGDSQ----VISTQIAGTLGYLDPEYLSTGQLSLNSDVYSFGVLLLELITARPAREATGGLLVTVVKTSLETWGISVLKEELMDPFLKDS----------------LLTCVQELGSQRPSMSDAVKELEAILAATETGNLPHS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1064	80	20			0.996423
1073	80		20		0.997017
1123	40		60		1.0
1632			16	83	0.994512
1818		16		83	0.994512
2049		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain