SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8886

Length: 1057 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8886 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate transporter, putative n=1 Tax=Ricinus communis RepID=B9RUY1_RICCO	-	-	60%
FL-Next	tr=Sulfate transporter, putative; Ricinus communis (Castor bean).	-	-	68%
Blast2go	sulfate transporter	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sulphate transporter	IPR011547	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RUY1

Fln msg: your sequence is shorter than subject: 300 - 464

Fln protein: VVTLVGWDGLVLALVCFCFIVLVTGSGDGNGESQGEAGNGDSATDSRIPNRYLRIVNSIPSALIVFLAGIAICIVRDPEILKQLKLGPSKIHVVKISKEDWKTGFIRAAIPQIPLSVLNSVIAVCKLSTDLFPQKVVTATSVSASVGLMNLVGCWFGAMPVCHGAGGLAGQYRFGARSGASVVFLGTAKMVLGLLLGSSLLKILTQFPVGLLGVLLFFSGVELAMASRDMNTKQDSFVMLVCAAVSLTGSSAALGFGCGIALYVLLKLRELNCDNCIQIFHSTRGKSMETMAQGQGSNI*

Protein Length: 301

Fln nts: CGTCGTGACCTTGGTAGGGTGGGATGGTCTTGTTTTAGCACTTGTTTGTTTCTGTTTCATTGTGCTGGTAACTGGGTCTGGGGATGGAAATGGAGAAAGCCAAGGTGAGGCTGGAAATGGAGATTCTGCTACAGATAGCAGGATTCCGAATAGATATCTGAGAATTGTGAATTCTATTCCCTCTGCCCTTATTGTGTTTCTAGCTGGGATTGCCATCTGTATTGTGAGAGATCCTGAGATTCTGAAACAGTTGAAGCTAGGCCCATCGAAAATTCATGTTGTTAAGATATCTAAAGAAGATTGGAAGACAGGGTTCATTAGGGCTGCAATACCGCAAATACCCTTATCTGTCTTGAACTCTGTTATAGCAGTCTGCAAATTATCTACAGATCTGTTTCCACAAAAGGTAGTGACTGCAACTTCCGTGTCTGCAAGTGTGGGACTGATGAATCTGGTGGGTTGTTGGTTTGGGGCCATGCCTGTTTGTCATGGGGCAGGAGGGCTTGCTGGTCAGTACCGTTTTGGGGCAAGAAGTGGAGCCTCTGTGGTGTTCTTGGGTACTGCTAAGATGGTTTTAGGCCTGCTTCTGGGTAGTTCCCTGCTGAAAATCCTGACCCAGTTCCCTGTTGGGTTGCTAGGAGTGTTGCTGTTCTTCTCTGGTGTAGAATTAGCCATGGCTTCTCGCGACATGAATACGAAGCAGGATTCGTTTGTAATGCTTGTCTGCGCTGCCGTTTCTCTCACTGGATCCAGTGCAGCGCTTGGATTTGGATGTGGAATTGCCCTGTATGTTCTTCTAAAGCTCAGGGAATTGAATTGTGATAACTGCATACAGATTTTCCATTCTACTAGAGGGAAATCCATGGAGACAATGGCTCAGGGGCAAGGGTCAAACATTTAA___ATGTGTAAATATGTAACTTTGATTGACAGCTGCAAGAGACTGAATCTCTTTGGCAGTCGTATCTTGAAAATAGTTTGAATTTCTGTGCTGTTTGTATCCTCCGTGGATATGCCAAATAGATTTATCCAGTGGTCTCAATAGTACTTGGATTTCTTC

Fln Alignment:

sp_v1.1_unigene8886___VGWDGLVLALVCFCFIVLVTGSGDGNGESQGEAGNGDSATDSRIPNRYLRIVNSIPSALIVFLAGIAICIVRDPEILKQLKLGPSKIHVVKISKEDWKTGFIRAAIPQIPLSVLNSVIAVCKLSTDLFPQKXXXXXXXXXXVGLMNLVGCWFGAMPVCHGAGGLAGQYRFGARSGASVVFLGTAKMVXXXXXXXXXLKILTQXXXXXXXXXXXXXXXXLAMASRDMNTKQDSFVMLVCAAVSLTGSSAALGFGCGIALYVLLKLRELNC
B9RUY1______________LGLDGLVLAISALLFLIFTTGSG-ADHPSMSDDDQSLTRSSQRRVNRRLRILSAIPAALIVFLFGLVLCFIRDPSIIKDLKFGPSRIQVLKIAWEDWKIGFLRGAIPQIPLSVLNSVIAVCKLSTDLFPDRELSATKVSISVGLMNLVGCWFGAMPVCHGAGGLAGQYRFGARSGASVVFLGIGKLVIGLVFGNSFIRILNQFPIGILGVLLLFAGIELAMASKDMNTKEESFVMLVCAAVSMTGSSAALGFGCGILLYLLLKLRSMDC

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
685	25		75		1.0
832		77	22		0.999999
868		28		71	1.0
871			83	16	0.994512
899		80	20		0.995493
904	80		20		0.995493
905	20			80	0.995493
909			20	80	0.995493
910		20		80	0.995493
912	20		80		0.995493
913	20		80		0.995493
914	80		20		0.995493
915	80		20		0.995493
919			20	80	0.995493
920	20		80		0.995493
922			20	80	0.995493
925		75		25	0.996473
928		25		75	0.996473
948	50		50		1.0
1036		66	33		0.997452
1039	66			33	0.997452
1040		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain