SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8866

Length: 596 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8866

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ammonium transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9PAI8_POPTR	-	-	2.0e-16	62%
FL-Next	sp=Ammonium transporter 1 member 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%
Blast2go	ammonium transporter	-	-	3.54764e-16	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	3.54764e-16	75%
Blast2go	methylammonium transport	GO:0015843	Biological Process	3.54764e-16	75%
Blast2go	ammonium transport	GO:0015696	Biological Process	3.54764e-16	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.54764e-16	75%

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
165	25		75		0.996473
166		25	75		0.996473
167		25	75		0.996473
176	75	25			0.996473
177	25			75	0.996473
192	80	20			0.995493
194			80	20	0.995493
196	80		20		0.995493
197		80		20	0.995493
198	80		20		0.995493
200	80	20			0.995493
201		20		80	0.995493
203		80		20	0.995493
204	80		20		0.995493
205			20	80	0.995493
207		80		20	0.995493
208			20	80	0.995493
209	80			20	0.995493
212			80	20	0.995493
213		20	80		0.995493
214	20		80		0.995493
235	83		16		0.994512
236			83	16	0.994512
237	83	16			0.994512
240		83	16		0.994512
242	83	16			0.994512
243	83	16			0.994512
247	83		16		0.994512
250	83			16	0.994512
260	85		14		0.993533
262			14	85	0.993533
263	14	85			0.993533
296	81	18			0.999994
409		85		14	0.993533
410			85	14	0.993533
475	25			75	0.996473
496		75	25		0.996473
498	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain