SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8850

Length: 1977 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8850
GCACTTCATTCCAAATGCTGATTTTATTTATTTAATTGCAGGCCATATACCAATGTTGCAGATTATCTATCCAGTACTATATGTTTTATGCGTCATGCAGACTGACCGGCCGAATACAAAAGCACAAACGAGTCGCACTTGGAAGGCAAGACGACTTCTGCCGTTGATCGATCGGAGCACCTGCACAGATCTCTCATGGCTAACCTTTCACGCTTCTTTCCAGCTTTACGAAGAGAATTGAGCCGTTTATCGGCCGGATCTGCGTCACGAGTTCGATTCCTGTCTAGTGATGCGAGGGGGTACCACTTGGGGAACGGCCTTTCCAGCATGCGGGCGGCCGTGTTCTGGGAACCCGGAAGGCCTCTCAGTATTGAAGACTTCCACATGCCCCGCCCCAAGGCTGGAGAAATTTTAATCAAGACCAAAGCCTGTGGGGTGTGCCATTCTGATCTTCATGTCATGAATGGTGACTTGCCTTTTGCAAGGCCTTGTGTAGTGGGCCATGAAATAACAGGAGAAGTAGTTGAGCATGGAGTACATACTGAGTCTGGTATAATAAAGAGATTTCCCATTGGAGCTCATGTTGTAGGAGCTTTTATTATGCCTTGTGGAAACTGTTTTTACTGTGTAAAGGGGCAAGAAGATCTTTGCGAGCCATTTTTTACTTACAACCGAGCTAAAGGAACTCTCTATGATGGTGAAACTCGTCTATTTCTTCGCAGCAATGGCAAGCCTGTTTACATGTATAGCATGGGAGGACTTGCAGAGTACTGTGTTGTTCCAGCCACAGCTTTAGCTGTTCTCCCAGCATCATTGCCATATACAGAGTCTGCTGTTCTTGGATGTGCTGCCTTTACAGCATATGGTGCAATGAGACATGCAGCTGACCTGCGTGCTGGAGAAAGTGTCGCTGTCATTGGTATTGGTGGAGTAGGATGTAGTTGTTTGCAGATAGCAAAGGCTTTTGGAGGCAGCAAGATAATTGCTGTTGATGTTCAAGATGAAAAGCTTGAGAATGCTAGAAAGCTGGGAGCAACCCATACTGTTAATGCATTAAAAGTGAATGCTGTAGATACAATCAAAGAAATCACAGAGGGCAGGGGTGTTGATATTGCTGTGGAAGCATTAGGAAAACCAGAGACTTTTATGCAGACTGTGCTTAGTGTAAGGGATGGTGGAAAAGCTGTCATGATTGGGCTTGCTGCTTCTGGTGTTAAAGCAGAAATTGACATAACCCGCCTTGTTCGCCGTCAGATTAAAATTCTTGGATCATATGGAGGTAGAGCACGACAAGATCTTCCAACGTTAGTAGGACTTGCTGAAACAGGCATCTTCAATTTGGAAGCTGCTGTTTCAAAGAAATGTAAATTGGATGAAGCAGGTGAAGTTTATAATGCTCTCAACAGGGGGGAAATTGTAGGTCGAGCTGTGATTGAGATTATGTAAACAAAGACCCAAGTGTTTTTCTTTACTTGCTGTGATTAGATTCATGTGTTTTTGACTGATTTGCTTTTGTTGATAGACATGTCTAGCCCATATTGTCCTGGATTTATCATTCTTCTATTTGAGAAATAATACAGGAATAAGAGCAAGCTGAGATTATGATTGATCCATTTGCTCACATTGCTTTTGATTGGTGACTTCAATTTTTATTTTCTGATAATGGTGGAAATAGATGCCTCTTGAGCGTCTCCAAGGAGTTTGTCTTAGTTGGTGTGCAGCTTGTAGTAGTAGGTGCCGAACTCTAACAAAATGAGAAATAAAAACTTTACAAAACAAGATGAGAATGCACTTGTAAAAGGGAAAGGAGAATGTGCAGAAAGGTTCATTGTTATGAAAATGAGCGTGGAGATGATTTTTTCTTTTTACATTTTTCCAATGTATGAATGCATGTTAAGAGGCTCCAAAGCAAACTTAGGCCAGAGGAATATGTTGAAAAATACAAAGGGTTCTCAGAGAAAGGAATGGTTGTACTTG

Ace file of the UniGene sp_v1.1_unigene8850

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, zinc-binding dehydrogenase family protein	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	zinc-binding dehydrogenase family protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	83%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRL9

Fln msg:

Fln protein: MANLSRFFPALRRELSRLSAGSASRVRFLSSDARGYHLGNGLSSMRAAVFWEPGRPLSIEDFHMPRPKAGEILIKTKACGVCHSDLHVMNGDLPFARPCVVGHEITGEVVEHGVHTESGIIKRFPIGAHVVGAFIMPCGNCFYCVKGQEDLCEPFFTYNRAKGTLYDGETRLFLRSNGKPVYMYSMGGLAEYCVVPATALAVLPASLPYTESAVLGCAAFTAYGAMRHAADLRAGESVAVIGIGGVGCSCLQIAKAFGGSKIIAVDVQDEKLENARKLGATHTVNALKVNAVDTIKEITEGRGVDIAVEALGKPETFMQTVLSVRDGGKAVMIGLAASGVKAEIDITRLVRRQIKILGSYGGRARQDLPTLVGLAETGIFNLEAAVSKKCKLDEAGEVYNALNRGEIVGRAVIEIM*

Protein Length: 418

Fln nts: GCACTTCATTCCAAATGCTGATTTTATTTATTTAATTGCAGGCCATATACCAATGTTGCAGATTATCTATCCAGTACTATATGTTTTATGCGTCATGCAGACTGACCGGCCGAATACAAAAGCACAAACGAGTCGCACTTGGAAGGCAAGACGACTTCTGCCGTTGATCGATCGGAGCACCTGCACAGATCTCTC_-_ATGGCTAACCTTTCACGCTTCTTTCCAGCTTTACGAAGAGAATTGAGCCGTTTATCGGCCGGATCTGCGTCACGAGTTCGATTCCTGTCTAGTGATGCGAGGGGGTACCACTTGGGGAACGGCCTTTCCAGCATGCGGGCGGCCGTGTTCTGGGAACCCGGAAGGCCTCTCAGTATTGAAGACTTCCACATGCCCCGCCCCAAGGCTGGAGAAATTTTAATCAAGACCAAAGCCTGTGGGGTGTGCCATTCTGATCTTCATGTCATGAATGGTGACTTGCCTTTTGCAAGGCCTTGTGTAGTGGGCCATGAAATAACAGGAGAAGTAGTTGAGCATGGAGTACATACTGAGTCTGGTATAATAAAGAGATTTCCCATTGGAGCTCATGTTGTAGGAGCTTTTATTATGCCTTGTGGAAACTGTTTTTACTGTGTAAAGGGGCAAGAAGATCTTTGCGAGCCATTTTTTACTTACAACCGAGCTAAAGGAACTCTCTATGATGGTGAAACTCGTCTATTTCTTCGCAGCAATGGCAAGCCTGTTTACATGTATAGCATGGGAGGACTTGCAGAGTACTGTGTTGTTCCAGCCACAGCTTTAGCTGTTCTCCCAGCATCATTGCCATATACAGAGTCTGCTGTTCTTGGATGTGCTGCCTTTACAGCATATGGTGCAATGAGACATGCAGCTGACCTGCGTGCTGGAGAAAGTGTCGCTGTCATTGGTATTGGTGGAGTAGGATGTAGTTGTTTGCAGATAGCAAAGGCTTTTGGAGGCAGCAAGATAATTGCTGTTGATGTTCAAGATGAAAAGCTTGAGAATGCTAGAAAGCTGGGAGCAACCCATACTGTTAATGCATTAAAAGTGAATGCTGTAGATACAATCAAAGAAATCACAGAGGGCAGGGGTGTTGATATTGCTGTGGAAGCATTAGGAAAACCAGAGACTTTTATGCAGACTGTGCTTAGTGTAAGGGATGGTGGAAAAGCTGTCATGATTGGGCTTGCTGCTTCTGGTGTTAAAGCAGAAATTGACATAACCCGCCTTGTTCGCCGTCAGATTAAAATTCTTGGATCATATGGAGGTAGAGCACGACAAGATCTTCCAACGTTAGTAGGACTTGCTGAAACAGGCATCTTCAATTTGGAAGCTGCTGTTTCAAAGAAATGTAAATTGGATGAAGCAGGTGAAGTTTATAATGCTCTCAACAGGGGGGAAATTGTAGGTCGAGCTGTGATTGAGATTATGTAA___ACAAAGACCCAAGTGTTTTTCTTTACTTGCTGTGATTAGATTCATGTGTTTTTGACTGATTTGCTTTTGTTGATAGACATGTCTAGCCCATATTGTCCTGGATTTATCATTCTTCTATTTGAGAAATAATACAGGAATAAGAGCAAGCTGAGATTATGATTGATCCATTTGCTCACATTGCTTTTGATTGGTGACTTCAATTTTTATTTTCTGATAATGGTGGAAATAGATGCCTCTTGAGCGTCTCCAAGGAGTTTGTCTTAGTTGGTGTGCAGCTTGTAGTAGTAGGTGCCGAACTCTAACAAAATGAGAAATAAAAACTTTACAAAACAAGATGAGAATGCACTTGTAAAAGGGAAAGGAGAATGTGCAGAAAGGTTCATTGTTATGAAAATGAGCGTGGAGATGATTTTTTCTTTTTACATTTTTCCAATGTATGAATGCATGTTAAGAGGCTCCAAAGCAAACTTAGGCCAGAGGAATATGTTGAAAAATACAAAGGGTTCTCAGAGAAAGGAATGGTTGTACTTG

Fln Alignment:

sp_v1.1_unigene8850___MANLSRFFPALRRELSRLSAGSASRVRFLSSDARGYHLGNGLSSMRAAVFWEPGRPLSIEDFHMPRPKAGEILIKTKACGVCHSDLHVMNGDLPFARPCVVGHEITGEVVEHGVHTESGIIKRFPIGAHVVGAFIMPCGNCFYCVKGQEDLCEPFFTYNRAKGTLYDGETRLFLRSNGKPVYMYSMGGLAEYCXXXXXXXXXXXXXXXYTESAVLGCAAFTAYGAMRHAADLRAGESVAVIGIGGVGCSCLQIAKAFGGSKIIAVDVQDEKLENARKLGATHTVNALKVNAVDTIKEITEGRGVDIAVEALGKPETFMQTVLSVRDGGKAVMIGLAASGVKAEIDITRLVRRQIKILGSYGGRARQDLPTLVGLAETGIFNLEAAVSKKCKLDEAGEVYNALNRGEIVGRAVIEIM
A9NRL9______________MAALSRFFPALRRELGRLSAGSASRGRFLSSDASGYHLGNGPSSMRAAVFWEPGRPLSIEDFHMPRPKAGEVLIKTKACGVCHSDLHVMNGDLPFARPCVVGHEITGEVVEHGVHTESGIIKRFPIGAHVVGAFIMPCGNCFYCVKGQEDLCEPFFTYNRAKGTLYDGETRLFLRSNGKPVYMYSMGGLAEYCVVPATALAVLPASLPYTESAILGCAAFTAYGAMRHAADMRAGETVAVIGIGGVGSSCLQIAKAFGGSKIIAVDVQDEKLENARKLGATHTVNASKVNVVDTIKEITGGRGVDIAVEALGKPETFMQTALSVMDGGKAVMIGLAASGAKAEIDITRLVRRQIKILGSYGGRARQDLPILVGLAETGIFNLEAAVSKKCTFDEAGAVYDALNRGEIVGRAVVEIM

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
386	90		10		0.90298
395	11		88		0.923564
478		87		12	0.992554
693	14	85			0.993533
695	85		14		0.993533
696			14	85	0.993533
942			14	85	0.993533
972	88			11	0.923564
974			90	10	0.90298
977		10	90		0.90298
978		90		10	0.90298
979	90	10			0.90298
1467		10		90	0.90298
1468			10	90	0.90298
1471			10	90	0.90298
1483		10	90		0.90298
1485		10		90	0.90298
1487	90	10			0.90298
1539	85		14		0.993533
1541	85	14			0.993533
1542			14	85	0.993533
1545	14			85	0.993533
1551	85	14			0.993533
1553			14	85	0.993533
1759	60			40	1.0
1848		33		66	0.997452
1858	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain