SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8840

Length: 1120 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8840

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein n=1 Tax=Populus trichocarpa RepID=B9I661_POPTR	-	-	2.8026e-45	41%
FL-Next	Isoform 2 of F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24	-	-	0.0	40%
Blast2go	f-box family protein	-	-	5.60519e-45	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9CAZ0-2

Fln msg: your sequence is shorter than subject: 256 - 274

Fln protein: MDTVPDEIWTRIFEIGIEQNILSYRDLSSIAISSRRLCRLSGQNGVWKLLWAKDFPSEADSAAFHQKYKSIYRLKFERIKAVKVAAHKRSVLRIQSQALVLERECKDLETQLQEEKKRHNSTLVEFKNLERARQSSIALNVWQPQFVRMAQNSVLEHTPVHTGSRIHSLKMEMRVCKERIARFTRSINEKQNMMERVKRELEALRYKPLKESYDAPTKTCFEVQRKKRKIMEQKDKDVSNRTYMPYEIDTTFYKK*

Protein Length: 257

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTCTGTATAATGTACCTAAAGCGTGCCTACCGCAAGTAGGCCTATGCCTCTATTTTTTATATACACCGCTTAGCTGAAAATACTATCTTCTCCTTTAGTTGATCTCCATCT_-_ATGGATACGGTTCCAGACGAGATATGGACTCGCATATTCGAAATTGGTATTGAGCAGAACATCTTGAGTTACAGGGATTTATCGTCAATTGCAATTTCTTCGCGGCGCCTTTGCAGATTAAGTGGCCAAAACGGTGTGTGGAAATTGCTGTGGGCTAAAGATTTCCCTTCTGAGGCCGATTCTGCAGCTTTTCATCAGAAATACAAGTCTATTTACAGGCTGAAGTTTGAAAGAATAAAAGCGGTCAAAGTTGCTGCACATAAGAGGTCGGTATTAAGAATTCAAAGCCAGGCACTTGTTCTTGAGAGGGAATGTAAGGACCTGGAAACCCAACTACAGGAAGAAAAGAAAAGGCACAACTCTACTTTGGTAGAATTCAAAAACCTTGAAAGGGCAAGGCAATCCTCTATAGCATTAAATGTTTGGCAACCACAATTTGTTCGAATGGCACAAAATAGTGTTCTTGAACATACTCCAGTGCATACAGGGTCTCGTATACACTCATTAAAGATGGAGATGCGTGTTTGTAAAGAGCGCATTGCAAGATTCACCAGAAGTATTAATGAAAAACAGAATATGATGGAAAGAGTCAAGAGGGAGCTGGAAGCTTTGAGGTACAAACCATTGAAAGAATCTTATGATGCTCCTACCAAAACATGCTTTGAGGTGCAGAGAAAGAAGCGAAAAATAATGGAACAGAAGGACAAGGATGTATCAAACCGGACTTACATGCCTTATGAAATTGATACGACTTTTTATAAGAAGTAA___CATTGATATTCAAACTATCAGCAATGTATTTTTAATCAATCCGTCATTAATTTCTCCATAGCCATTTTCTTATTCATTTAGATGTTAGAAATTTTCATTCCTACAAAATTGGTTCATGTGTTTTGAATATTTTAGTAGGATGCAAACTTCTGAGGATTGTGTAATATCATAACTATGATATTTAAACTTACGAAATATAGTAACTCTAGCCAAAG

Fln Alignment:

sp_v1.1_unigene8840___SMDTVPDEIWTRIFEIGIEQNILSYRDLSSIAISSRRLCRLSGQNGVWKLLWAKDFPSEADSAAFHQKY--KSIYRLKFERIKAVKVAAHKRSVLRIQSQALVLERECKDLETQLQEEKKRHNSTLVEFKNLERARQSSIALNVWQPQFVRMAQNSVLEHTPVHTGSRIHSLKMEMRVCKERIARFTRSINEKQNMMERVKRELEALRYKPLKE
Q9CAZ0-2____________SANEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVSASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERLQSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQIMGLNRALREVKHRYDIAIKELESMKYHPLRD

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
97		25	75		1.0
101	87		12		0.992554
106	75			12	0.975346
107	87	12			0.992554
109	75	25			1.0
113	12			87	0.992554
140	25			75	1.0
150		10	90		0.90298
151			10	90	0.90298
154		90	10		0.90298
155	90			10	0.90298
157	90		10		0.90298
159		10	90		0.90298
160	90			10	0.90298
161			90	10	0.90298
162	90		10		0.90298
163			10	90	0.90298
164	90	10			0.90298
167		10	90		0.90298
171	10	90			0.90298
173	10	90			0.90298
476	50	50			1.0
576	33			66	0.997452
610	75			25	0.996473
613	75		25		0.996473
617		75		25	0.996473
620		25	75		0.996473
736	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain