SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8832

Length: 1829 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8832

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	atp binding	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LUC7-related	IPR004882	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABV1

Fln msg:

Fln protein: MDSLRKQLDALMGTNRNGDVTEIKRNYYDRDVCRLYLAGLCPHDLFQLTKMDLGACSKVHSLQLRKEYESAKAKGKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEDYTKQIKEKLKEADLLDLEGKSDNKIRVMEQVEELRGKRADKQATLLLEAFNKDRAMMPQPLQNPPPLAPLPLPPDARTQEMIMEKLKMAEELGEMGMVDEAQRALEEAEALKKIGGRQEPANDSTKYTSVDVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLVDLQEERNKLRRQDRSEDDGRLRDRASSRDRDRAVSRDRDRERDERDRGRDSVGSRDRERDRGRERDRDRRSRDRERGNEKERDRDLESSRSYDSRSRRRSRSRSRERLTEHSRDRERDRSDRHRRYDRHDRY*

Protein Length: 441

Fln nts: ATATGGGGATGAAAATTGTTTCATTCGCTCTGCTCAAAAACACACATCTGAAGGGTTCGAATCGCGACCCTGAATGCGAATGCGAATGTAGATGTAGATGTAGCGGATTCGCGTTTAAAGCTCAGACGAAGCTGATTTTCTGCCTATTGGTATTGATCGAGTGACAAGTTCTCATAGCCGCGGTGTAATATAGAAGGAAGGATTAAATAGAAAAAA_-_ATGGATTCGCTTCGCAAGCAATTAGATGCTTTAATGGGAACCAATCGCAACGGGGACGTAACAGAAATCAAACGCAACTATTATGATCGGGATGTTTGCCGTCTCTATTTAGCCGGACTTTGCCCTCACGACCTCTTTCAATTAACTAAAATGGATTTAGGTGCTTGCTCGAAAGTTCACTCCTTACAACTACGAAAAGAATATGAAAGTGCAAAGGCAAAAGGTAAAGATAATTATGACAGGGAGCTAGAAGATGTTCTTGAAAGGCATATTGGCGAGTGTGACAGGAAAATTACAAGAGCCCTAAGACGCCTAGAGGATGACGATGCTAAGGCTGCAACAGCAATATCTGTATCTGCAGTTACACAGTCCCCTGAGGTGGAAGACTACACAAAACAAATAAAGGAGAAGCTGAAAGAAGCAGATCTTCTGGACTTGGAAGGGAAATCTGACAATAAGATTAGGGTAATGGAGCAAGTTGAAGAGCTGAGAGGAAAACGAGCTGATAAACAGGCTACGCTTCTTTTGGAGGCTTTTAATAAGGATAGAGCTATGATGCCTCAACCACTTCAAAATCCTCCTCCACTGGCTCCTTTGCCGTTACCTCCTGATGCACGGACACAGGAAATGATAATGGAGAAGCTCAAAATGGCTGAAGAACTGGGAGAAATGGGAATGGTTGATGAAGCACAAAGAGCTTTGGAGGAAGCGGAGGCTCTGAAAAAGATTGGTGGCAGGCAGGAACCAGCAAACGATTCTACGAAGTACACCTCCGTCGATGTGCGCATTACTGATCAGAAGCTTCGTGTATGCGACATTTGTGGAGCTTTCTTGAGTGTTTATGACAGTGATCGTCGGTTGGCTGATCATTTTGGAGGGAAACTTCATTTAGGGTATATGCAAATCCGAGAGAAGCTGGTTGATCTGCAGGAAGAAAGAAATAAACTCAGAAGACAGGATCGATCTGAAGACGATGGAAGGTTGAGAGATCGGGCATCCAGCAGGGACAGAGATAGGGCAGTCAGCAGGGACAGAGATAGGGAGAGAGATGAGCGTGATCGTGGTCGAGATAGTGTTGGAAGCAGAGATCGAGAACGTGATAGAGGGAGAGAAAGGGATCGTGATCGCAGAAGCAGAGACAGAGAGCGGGGGAACGAGAAGGAGCGTGATAGGGATTTGGAAAGTTCTCGAAGTTATGACTCCCGCAGTCGCAGGAGGTCACGTTCACGGTCAAGAGAAAGATTAACTGAACACTCCAGAGATCGTGAAAGGGACAGGAGTGACCGTCACAGGCGGTATGATAGGCATGATCGGTACTGA___AATGATACATGATCAGAACAGAACATTGTTGAGGCCGTTTCTCACGCCCCAGCCACAATCTTATGTAATTTTGAACTTCGTTTAGAAAATACTTGTAGCTTCAAATTTATCTTACTCATGGATCAAGGCTTTATATGTTTATCATCCAGAGACAGATATGCAGAACCAAAGGGAGTCATTATGCTGCAAATATTATGTTGGTGTTGTATATGAATATATTGCTCTAGCTTTAGTGTCACAATTAACTATTCATCAAAAGTTTAGAGGTGGTAAAGGTTGATTGGCATTACTAA

Fln Alignment:

sp_v1.1_unigene8832___MDSLRKQLDALMGTNRNGDVTEIKRNYYDRDVCRLYLAGLCPHDLFQLTKMDLGACSKVHSLQLRKEYESAKAKGKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEDYTKQIXXXXXXXXXXXXXXXSDNKIRVMEQVEELRGKRADKQATLLLEAFNKDRAMM--XXXXXXXXXXXXXXXXXDARTQEMIMEKLKMAEELGEMGMVDXXXXXXXXXXXXKKIGGRQEPANDSTKYTSVDVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLVDLQEERNKLRRQDR
D5ABV1______________MDSLRKQLDTLMGTNRNGDVTEIKRNYYDRDVCRLYLAGLCPHDLFQLTKMDLGACSKVHSLQLRKEYESAKAKAKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEEYTKQIKEKLKEAEYLDLEGRSDDKIRIMELVEELRAKRADKQAMLLLEAFNKDRASMPQPLQTPPPLAPLPMPGPPDARTQEMIIERLRKAEELGELGRVDEAQKFMEEAEALKKLGARQEAGADSSKLAAVDVRITDQKLRVCDICGAFLSIYDSDRRLADHFGGKLHLGYMQIRQKLTDLREERNKLRKLDR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
71		12		87	0.992554
495		66		33	0.997452
1290	33			66	0.997452
1291		66		33	0.997452
1293	66		33		0.997452
1522			21	78	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
86	103	ATGTAG ATGTAG ATGTAG	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain