SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8798

Length: 1318 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8798

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycine-rich protein	-	-	8.0e-17	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKP1

Fln msg: Distance to subject end: 398 aas, your sequence is shorter than subject: 154 - 546

Fln protein: MAGSEVATPASPNGSAVPSGSSLVKDGPVLSMMNKRLRALKKKYNRILQIEESKAQGKVINKEQDDVLRSKASVAVLIDEYEKLRQPLAAAVKEEIAEKEKELLEENAASKEPTAEDGVVTEGSSIPENGTQDTQDSDEVKISEATPPAEGDVA

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATAAAGTGGAGGCAAACGGAAATAGAGTAGAAACGCAGAGCGCGCTATCAGGGGAGGAGTAGGAGACGAAAGAAATTACGACATAACAGTGATAACAGTGATAGTAGGTAGGTGATTCTTGATATGGTTTGAACACTTGCATGTCTGCGTAGCATCACGTTGCTGTTAAAATCTGCACGCGCGGCTCTGGATTTTCTCATTATCATTGACCCAAATTCAATCGTACCGCAACCCTGTTTGAAGTATTTTTTTCTTATCCTTTTTCTGCTTTTAGAAAGCTCTGGGATGAGACCATATTCAGTGTATGCCGGGCAGATTGACGGGTAGTTATTGAACTCAAAACCCTCGTAAATGTTTCGAGTTTCTTCTCTGCTTTTAATGTCTCGGGGTTTGTTTTGAAGGGTTCTGGGGTTCAAAATTTGTTTTTCTGTAGTTCACCGTTGAGGTTTAGAGCCGAGACCTGTAAAGTAGGTTTTGAGGTTGAAAATCTTGAACGGGTCTCGGTGATTCGCCGTGTTTTGGTCATTTTTCTTTTAAAGGGTTACGGGGCTTTGGGTTCTTCACGGAGTCTGAAATAGAAGCCTAGAACTGCGGCTGGAGTTAGGATTTGAGCTTTAAACCCCCCGGAGTGAATTTCTGGCGCTTGTAGCATATTTTGGGGATTCTGCGGCTATCTGGGGGTTGTGTGAACAACGAATGAGCGTGTAAAGTGTCTGCCATGAAAGTTTAGGTACCCCGCTGTTTGAGGTAGGGCTTCAGCTTAAGATACTAAAACCCTCGCGTTACCCTGTATTCTTCAACATAAGTTGCACTTTTAGACGACTACA_-_ATGGCCGGCTCAGAGGTAGCAACTCCTGCATCCCCCAATGGCTCCGCCGTTCCTTCCGGGTCTTCCCTTGTTAAGGACGGTCCTGTTCTGTCCATGATGAACAAGCGTCTCAGGGCCCTAAAAAAGAAATATAACCGGATATTACAGATCGAGGAAAGTAAAGCCCAGGGTAAAGTTATAAACAAAGAGCAGGACGATGTGTTGAGGTCAAAGGCCAGTGTTGCCGTATTGATCGATGAGTACGAGAAACTTAGGCAGCCTCTTGCTGCTGCTGTGAAGGAAGAGATTGCCGAGAAAGAAAAAGAGTTACTAGAAGAGAATGCCGCCAGCAAGGAGCCTACAGCTGAAGATGGTGTTGTCACAGAGGGTTCCAGTATCCCGGAGAATGGAACCCAAGACACACAGGATAGTGACGAGGTGAAGATTAGTGAAGCAACTCCTCCAGCAGAGGGAGATGTTGCCAA

Fln Alignment:

sp_v1.1_unigene8798___MAGSEVATPASPNGSAVPSGSSLVKDGPVLSMMNKRLRALKKKYNRILQIEESKAQGKVINKEQDDVLRSKASVAVLIDEYEKLRQPXXXXXXXXXXXXXXXXXXXXXXXXXPTAEDGVVTEGSSIPENGTQDTQDSDEVKISEATPPAEGDVA
B8LKP1______________MAGSESATPASPNGCVNPSGSSLVKDGPVLCLMNKRLRALKKKYNRILQIEESKAQGKVINKEQDDVLRSKASVAVLIEEYEKLRQPLAVAVKEEIAEKEKELLEENAASKEPTAEDGVVTE-------ETQDTQDSDEVKTSEATPQAEGDDA

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
52	87		12		0.992554
53			12	87	0.992554
54	62		12		1.0
56	75		25		1.0
58			25	75	1.0
152	50		50		1.0
208		50		50	1.0
260	90		10		0.90298
279			33	66	0.997452
411	20		80		0.995493
504		20		80	0.995493
505			20	80	0.995493
509		20	80		0.995493
510		20	80		0.995493
514	80		20		0.995493
515	80	20			0.995493
516	80			20	0.995493
517	80		20		0.995493
520	20			80	0.995493
521		20		80	0.995493
522			80	20	0.995493
523	80	20			0.995493
791			90	10	0.90298
813		20		80	0.999996
913		83		16	0.994512
951	75		25		0.996473
1033			75	25	0.996473
1034			25	75	0.996473
1035			25	75	0.996473
1036	75		25		0.996473
1041		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain