SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8790

Length: 822 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8790

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pyrophosphate--fructose-6-phosphate 1-phosphotransferase	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	pyrophosphate-dependent phosphofructokinase alpha subunit	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphofructokinase domain	IPR000023	-	0.0	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM03

Fln msg: Distance to subject end: 296 aas, your sequence is shorter than subject: 260 - 558

Fln protein: MGMENMGTLQQLRSLFVPQIPPALEGGRVQLLRGDTTSAAHSSDEAEIRTSFNFTYGHPLVEFVSQNLVDGEIEENIFRAVIRVGVVFGMEAESPGAHNVIAGIFDALKAHNNNSILFGFVGGIDGLCSQNTLVVTDDLLKGYRNQGGCDLLGQSSKKIHEFQQMEDARSSCITLKLDGLVFVGGCSANTDAARLAEYFKSTKCQTTVVGVPVTLEGDLKNEFVETDIGFDTVCKVSSQLIGNICLDALSAGKYYFFVRL

Protein Length: 261

Fln nts: CCCTGTAAGTCAGACTGGGCATTGTGCAGACAGAGAAAAT_-_ATGGGCATGGAGAACATGGGAACTCTGCAGCAGCTCCGCAGCTTATTCGTTCCGCAAATTCCTCCGGCACTCGAGGGTGGAAGAGTGCAATTGTTGCGTGGTGATACCACTTCCGCAGCACATTCATCTGATGAGGCTGAAATCAGGACGTCCTTTAATTTTACATATGGCCACCCTTTGGTAGAGTTTGTTTCTCAGAATTTGGTCGATGGAGAAATCGAGGAAAACATATTTCGCGCAGTGATCAGGGTTGGAGTGGTTTTTGGAATGGAAGCTGAATCACCGGGTGCTCACAATGTGATAGCAGGGATTTTTGACGCTTTGAAGGCACACAATAACAACAGTATCCTCTTTGGATTCGTGGGCGGGATTGATGGTCTGTGTTCACAGAACACATTGGTAGTGACAGATGATTTGTTGAAAGGCTACCGCAATCAAGGAGGATGTGATCTTTTGGGGCAGTCATCAAAGAAAATACATGAATTCCAGCAGATGGAAGATGCTAGAAGCTCCTGTATAACGTTGAAATTGGATGGGCTAGTTTTTGTTGGAGGTTGCAGTGCAAACACAGATGCAGCTCGACTGGCTGAGTATTTCAAGTCTACAAAATGTCAAACAACTGTCGTTGGAGTTCCTGTCACACTTGAAGGCGATTTAAAGAATGAATTTGTAGAAACAGATATAGGCTTTGATACTGTATGCAAGGTCAGTTCCCAACTCATTGGTAATATCTGTCTTGATGCTCTGTCAGCTGGGAAGTACTATTTCTTCGTACGACTTGT

Fln Alignment:

sp_v1.1_unigene8790___MGMEN-MGTLQQLRSLFVPQIPPALEGGRVQLLRGDTTSAAHSSDEAEIRTSFNFTYGHPLVEFVSQNLVDGEIEENIFRAVIRVGVVFGMEAESPGAHNVIAGIFDALKAHNNNSILFGFVGGIDGLCSQNTLVVTDDLLKGYRNQGGCDLLGQSSKKIHEFQQMEDARSSCITLKLDGLVFVGGCSANTDAARLAEYFKSTKCQTTVVGVPVTLEGDLKNEFVETDIGFDTVCKVSSQLIGNICLDALSAGKYYFFVRL
B8LM03______________MDMENDTGIMQKLRSLFVPQIPPALEGGRVQLLRGDTTSAAHSDDEDEIRKSFNFTYGQPLVQFVSQNLVDGENEENICPAVTRVGVVFGMEAESPGAHNVIAGIFDALKAHNNKSILFGFVGGTEGLCSQNALVVTDDMLKSYRNQGGSDLLEQSSKKIHDFQHREEARRSCITLKLDGLVFVGGCSTNTDAARLAEYFKSRKCQTTVVGVPVTLEGDLKNEFVETDVGFDTVCKFSSQLIGNICLDALSAGKYYFFIRL

SNPs (tot: 5)

Position	A %	G %	T %	Probability
430	75		25	0.996473
493	16		83	0.994512
495		16	83	0.994512
496		16	83	0.994512
724	83	16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain