SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8784

Length: 1499 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8784

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2P0_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	amino acid binding	-	-	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A920

Fln msg: your sequence is shorter than subject: 351 - 454

Fln protein: AKQGGSTTEVKTCLGRTVGVQSIGEHTAIELTGTDRPGLLSEISAVLTNLKCNVVAAEVWTHNMRVACVVYVTDELTSRPIEDHEQLAAIKEQLSNVLKGNDDRRGVKTDFSMGLTHTERRLHQMMFADRDYEGPDTRSLGENGRPIIKIENCNEKGYSVVNVHCKDRPKLLFDTVCTLTDMQYVVFHASINSSGTYALQEYYIRHMDGCTLDTEGEKQRVIKCLEAAIERRVSEGLRLELCTSDRVGLLSDITRIFRENGLSVTRADVTTRGDKAVNVFYVTDTSGNPVDMKIVEAIRREIGHTILQVKSMPSPRPCPTDTGDKAKFSFGSLLKSQIERLSYNFGLIKS*

Protein Length: 352

Fln nts: GAGCGAAACAGGGTGGTTCCACAACCGAAGTGAAGACCTGCTTAGGACGCACTGTAGGAGTTCAGTCTATAGGAGAACACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGTTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAAATGCAATGTGGTGGCAGCAGAAGTTTGGACTCATAACATGCGAGTTGCATGTGTGGTTTATGTAACCGATGAATTGACCTCGAGGCCCATAGAAGATCACGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTCAAGGGGAACGATGATAGAAGAGGTGTCAAGACAGATTTCTCGATGGGTTTAACACATACTGAGCGTCGGTTGCATCAGATGATGTTTGCGGACAGGGACTATGAGGGTCCTGATACCAGGTCATTGGGAGAAAATGGGAGGCCTATTATCAAAATAGAGAACTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCACTGTAAAGATAGGCCAAAGCTTCTTTTTGATACTGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCAGCATTAATTCCAGTGGAACCTATGCATTACAGGAATATTACATTCGTCATATGGATGGTTGTACTCTGGACACGGAAGGTGAGAAACAAAGAGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGAGTATCAGAGGGACTTCGTCTTGAACTCTGCACGAGTGACCGAGTTGGCCTGCTTTCTGATATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACCAGAGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTGTTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTATAAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTTCTCCCAGACCTTGTCCAACAGACACTGGAGATAAGGCCAAGTTCTCATTTGGCAGCTTACTAAAATCCCAGATAGAGCGTTTATCTTATAACTTTGGTTTAATCAAGTCCTAA___AAAGCTAAATCTAATAGAAACAGTGTTTCATCTGTTTACTCATTTTTGAAGACAAGTGCCCATCCTTCTGTAAAAGTGGCTTATCTTGAAAGTGTCAGGGTGCTTGCAACCTGTTGTAGGTCATGACACTGATGACTTATCTTCTGTATCATACAGTAGAAGGTCTCCAAGCAAAGTGTTATTGATTTATCGGTCTGCATCTTTTCGAAGCATCAAGTACCTCTTACAACAGGGTTTTGCACCAGGGTGCATTAGCTATTTCAAATTGTTGTAAGCTTTATCAAAACGTTTCACTGTATGGATCCAACCTGTGCCTTGTAAAATGCTGTTATACTTATTTTTCCTTTGTAACGTGTCATGTGGAAGCCACTTGCTCCTTCCGCACATACAGTTGTTGTACAGTATCCCACAACACATGTCGCAGTCTTGCCTGTAAGTACCAAG

Fln Alignment:

sp_v1.1_unigene8784___AKQGGSTTEVKTCLGRTVGVQSIGEHTAIELTGTDRPGLLSEISAVLTNLKCNVVAAEVWTHNMRVACVVYVTDELTSRPIEDHEQLAAIKEQLSNVLKGNDDRRGVKTDFSMGLTHTERRLHQMMFADRDYEGPDTRSLGENGRPIIKIENCNEKGYSVVNVHCKDRPKLLFDTVCTLTDMQYVVFHASINSSGTYALQEYYIRHMDGCTLDTEGEKQRVIKCLEAAIERRVSEGLRLELCTSDRVGLLSDITRIFRENGLSVTRADVTTRGDKAVNVFYVTDTSGNPVDMKIVEAIRREIGHTILQVKSMP-SPRPCPTDTGDKAKFSFGSLLKSQIERLSYNFGLIKS
D5A920______________AKQGGSTTEVKTCLGRTVGVQSIGEHTAIELTGTDRPGLLSEISAVLTNLKCNVVAAEVWTHNMRVACVVYVTDESTSRPIEEPEQLAAIKEQLSNVLKGNDDRRGVKTDFSMGLTHTERRLHQMMFADRDYEGPDTRSLGENGRPIIKIENCNEKGYSVVTVHCKDRPKLLFDTVCTLTDMQYVVLHATITSSGTYALQEYYIRHMDGCTLDTEGEKQRVIKCLEAAIERRVSEGVRLELCTSDRVGLLSDITRIFRENGLSVTRADVTTRADKAVNVFYVTDTSGNPVDMKIVEAMRREIGHTILQVKSIPSSPRPCPTDTGDKAKFSFGSLLKSQLERLSYNFGLIKS

SNPs (tot: 3)

Position	A %	C %	G %	Probability
102	75		25	0.996473
167	20		80	0.995493
253	88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain