SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8747

Length: 3078 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8747
CGTCGTGACCTTGGCTGTCACTCAATTTTAGGTTGCTGTTTTTCTATCTTAAAAGTCTTTAGGAGTAGTGACATTAACTGTAGTTTTTAGGCCATAGGTTGCAATTCAGAGTAACTAGAACAGTTGATTTTCATTGTACTGATTTCGTCGGAACCCACCCAATCACGCAGTTGGGCAATGGTGGAGTAAGCAGAGCCACAAGGGAACCTCTGTTGTTGTGAAAATGGAGAACCCAAATTACTCAATGCTAGAATTAGAGAGCCCTGCAAATGGTTTTCAGGTCGATAAGGGGGGTCGAGGCAAGAATGCTAAGCAGCTCACATGGGTTCTTCTGCTGAAGGCTCATAAGGCAGCAGGATGCCTGGCTTGGCTTGCCAATGGAGTTTGGGCACTTTTTGCTTCAGTCAGAAGACGTTTCACTGCGCCTTCTGATGAATCAGGGAAGTCTTCTCAGAAAAGCAAGCTTTACAGAGTTATCAGGTGTTTCCTTATAGCTTCCATTTTCTTGTTAGGGTTTGAGCTATTGGCTTATTGGAAGGGGTGGCATTTCAGCCGGCCAAATCTGCATATTTCCCCATTTCTAAGCATAAATGGCCTTCTACAATCTATATATTCAGGATGGCTTTATACCCGAGCGAATTATCTAGCTCCTCCTCTTCAGTATTTGGCCAATGTGTGCATCATATTGTTCCTTATCCAGTCGGCGGATCGAGCCCTGTTATGCGTTGGTTGTTTTTGGATTAAACTGAAGAAGATCAAGCCAGTTCCCAAATGCGAGTTGGGAGATGCAGCTGATTTGGAGCAGGGAGACAATGCAGCTTATCCGATGGTCCTTCTCCAGATGCCGATGTGCAACGAAAGAGAGGTTTATCAACAATCTATTGCTGCAGTCTGTAATCTGGATTGGCCAAAAGACCATATGCTTGTGCAAGTTCTTGATGATTCGGACGACGTGGAGGTGCAATTTCTGATTGCGGCAGAAGTTCAAAAATGGCAACAGAAAGGTGTTCATATTGTCTATCGACATCGAGTAGTGCGCACTGGCTATAAGGCTGGTGATCTTAAGTCGGCAATGAATTGTGATTATGTGAAGGACTATGAATTTGTTGCCATTTTCGATGCAGACTTTCGGCCTGACCCAGATTTCTTGAAAAGAACAGTTCCACATTTTAAGGGCAATGATGAGTTAGCCTTGGTGCAAGCAAGATGGTCCTTTGTCAACAGAGATGAAAATCTACTAACAAGATTACAAAATATCAATCTGTCTTTCCACTTTGAGGTAGAGCAGCAGCGTCAACAGCGTTTTCACTAACTTTTTTGGTTTTAATGGAACTGCTGGTGTCTGGAGAATCAAGGCCCTTGAGGAATCAGGGGGTTGGCTGGAAAGAACTACTGTGGAAGACATGGATATTGCTGTCCGTGCTCACCTTAATGGATGGAAATTTATATTTCTTGATGATGTTAAGTGTCTCTGCGAACTTCCAGAGTCATACGAAGCTTATAGAAAGCAGCAGCATCGATGGCATTCAGGTCCAATGCAATTGTTTCGCTTGTGTCTTCCAGACATTATCCGTTCTAAGATTGCTTTCTGGAAGAAGGCAAACTTAATATTCCTTTTCTTTTTGCTGCGAAAGCTTATCCTACCTTTTTATTCGTTTACCCTCTTCTGCATTATCCTTCCTATGACTATGTTCCTGCCAGAAGCTGAATTGCCTGCTTGGGTTGTTTGTTATGTGCCTGCTATTATGTCATTATTGAACATTCTACCTGCACCAAGATCTTTCCCTTTCATTATCCCCTACCTCTTGTTCGAGAACACAATGTCTGTCACTAAATTCAATGCCATGATCTCTGGACTGTTTCAACTTGGTAGTGCTTATGAATGGGTGGTAACAAAGAAATCAGGTCGGGCATCGGAAACCGATCTACTTGCATTGGTTGAAAGGGAATCACATGTTCAGTTAGAGCACCCAAAGCATCATCGTGGTGTTTCAGAGTCAGGTCTGGATGCCCTTAGCAAGCTTGATGAACAAAAGCATCAACAGCCTCCAAAAAAGAAACTCAACCGGATTTACAAAAAGGAACTGGCTCTTGCTTTCCTCCTCTTAACTGCCTCTGCTAGGAGCTTGATGTCTGCTCAGGGGATTCATTTTTACTTTTTACTCTTTCAAGGTATTTCCTTCCTTGTGGTTGGCCTAGACCTGATTGGTGAGCAAACCAGTTGACTCTGTGCTGGGGGACTTGAGGCCCTTCATACAAGATTTAAAGACTCTTCAAGTTGAGCAGGCACTGAATAAAAGCAGCTACAGGCCTAGACATACCAGAGTATTATTTCTCAGATATATTAAGGAGTAGGAAAATATGAATTTTGTTCTGACTTCATTGTTTCTATTGAACTGGTGCCACTACGTCCATGCAAAAGCAGCAAGGTCATCACTATATGGATACAGGATTTTTACACTAAACGGCAGCACGTGTTTTTGTTCCTAGAGTTAAAGTACGGATCACCTGGCAAGATCACCAAACCTTCTGAGCATTACGGATCACCTGGCAAGATTAGTACTGCTTCAGCAATATTTTTCTTTTCAATTTGTTTCAGGATTCAACTCTATGATCACCACTTCTTCCTGTAGATTGTTTTTTGTTTTAAGCTACTGCTCTAGCGACATAATTCTTTACTTTCTTTCCTACTCTTCCGATTCTCTATCAGTATTTTTGTGGGAACAATTTTTTCATATAGGCAAATCCTCATTTAAATTTATTGGAGAATGGAATATCTAGAGATGATAAACGAGGGTTACTCTGCCCTCCTTGACAGGTCTATTCACCCATTGTTATGATTTACCATCAAAAGATGTAAATCATATTTGTACATGTAATTGAATCCACTGGGTTAAACCCGTTTGACTATTATTTCCTCAATTTTGGCCTACTTTGGAACCTGATGATGTCAGGATGTTCCACAGAAATGATCTGTCAAGCAATTTTGGCCTACTTTGGAACTTGATGATGTCACTTATAATCCACAGGAATGATCTGTCAACAATTCAGGTACTTTGCAATTGAGTGGGTTTTAGT

Ace file of the UniGene sp_v1.1_unigene8747

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cslC5; cellulose synthase-like C5, glycosyltransferase family 2	-	-	59%
FL-Next	tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine).	-	-	46%
Blast2go	cellulose synthase-like glycosyltransferase family 2	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	0.0	75%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A3QT94

Fln msg: Separated hits, possible frame ERROR between 1324 and 1335, your sequence is longer than subject: 668 - 530

Fln protein: MENPNYSMLELESPANGFQVDKGGRGKNAKQLTWVLLLKAHKAAGCLAWLANGVWALFASVRRRFTAPSDESGKSSQKSKLYRVIRCFLIASIFLLGFELLAYWKGWHFSRPNLHISPFLSINGLLQSIYSGWLYTRANYLAPPLQYLANVCIILFLIQSADRALLCVGCFWIKLKKIKPVPKCELGDAADLEQGDNAAYPMVLLQMPMCNEREVYQQSIAAVCNLDWPKDHMLVQVLDDSDDVEVQFLIAAEVQKWQQKGVHIVYRHRVVRTGYKAGDLKSAMNCDYVKDYEFVAIFDADFRPDPDFLKRTVPHFKGNDELALVQARWSFVNRDENLLTRLQNINLSFHFEVEQQRQQRFH*LFWxxxxxAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLDDVKCLCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSKIAFWKKANLIFLFFLLRKLILPFYSFTLFCIILPMTMFLPEAELPAWVVCYVPAIMSLLNILPAPRSFPFIIPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRASETDLLALVERESHVQLEHPKHHRGVSESGLDALSKLDEQKHQQPPKKKLNRIYKKELALAFLLLTASARSLMSAQGIHFYFLLFQGISFLVVGLDLIGEQTS*

Protein Length: 669

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAGGTTGCTGTTTTTCTATCTTAAAAGTCTTTAGGAGTAGTGACATTAACTGTAGTTTTTAGGCCATAGGTTGCAATTCAGAGTAACTAGAACAGTTGATTTTCATTGTACTGATTTCGTCGGAACCCACCCAATCACGCAGTTGGGCAATGGTGGAGTAAGCAGAGCCACAAGGGAACCTCTGTTGTTGTGAAA_-_ATGGAGAACCCAAATTACTCAATGCTAGAATTAGAGAGCCCTGCAAATGGTTTTCAGGTCGATAAGGGGGGTCGAGGCAAGAATGCTAAGCAGCTCACATGGGTTCTTCTGCTGAAGGCTCATAAGGCAGCAGGATGCCTGGCTTGGCTTGCCAATGGAGTTTGGGCACTTTTTGCTTCAGTCAGAAGACGTTTCACTGCGCCTTCTGATGAATCAGGGAAGTCTTCTCAGAAAAGCAAGCTTTACAGAGTTATCAGGTGTTTCCTTATAGCTTCCATTTTCTTGTTAGGGTTTGAGCTATTGGCTTATTGGAAGGGGTGGCATTTCAGCCGGCCAAATCTGCATATTTCCCCATTTCTAAGCATAAATGGCCTTCTACAATCTATATATTCAGGATGGCTTTATACCCGAGCGAATTATCTAGCTCCTCCTCTTCAGTATTTGGCCAATGTGTGCATCATATTGTTCCTTATCCAGTCGGCGGATCGAGCCCTGTTATGCGTTGGTTGTTTTTGGATTAAACTGAAGAAGATCAAGCCAGTTCCCAAATGCGAGTTGGGAGATGCAGCTGATTTGGAGCAGGGAGACAATGCAGCTTATCCGATGGTCCTTCTCCAGATGCCGATGTGCAACGAAAGAGAGGTTTATCAACAATCTATTGCTGCAGTCTGTAATCTGGATTGGCCAAAAGACCATATGCTTGTGCAAGTTCTTGATGATTCGGACGACGTGGAGGTGCAATTTCTGATTGCGGCAGAAGTTCAAAAATGGCAACAGAAAGGTGTTCATATTGTCTATCGACATCGAGTAGTGCGCACTGGCTATAAGGCTGGTGATCTTAAGTCGGCAATGAATTGTGATTATGTGAAGGACTATGAATTTGTTGCCATTTTCGATGCAGACTTTCGGCCTGACCCAGATTTCTTGAAAAGAACAGTTCCACATTTTAAGGGCAATGATGAGTTAGCCTTGGTGCAAGCAAGATGGTCCTTTGTCAACAGAGATGAAAATCTACTAACAAGATTACAAAATATCAATCTGTCTTTCCACTTTGAGGTAGAGCAGCAGCGTCAACAGCGTTTTCACTAACTTTTTTGGTTxxxxxxxxxxxxTGCTGGTGTCTGGAGAATCAAGGCCCTTGAGGAATCAGGGGGTTGGCTGGAAAGAACTACTGTGGAAGACATGGATATTGCTGTCCGTGCTCACCTTAATGGATGGAAATTTATATTTCTTGATGATGTTAAGTGTCTCTGCGAACTTCCAGAGTCATACGAAGCTTATAGAAAGCAGCAGCATCGATGGCATTCAGGTCCAATGCAATTGTTTCGCTTGTGTCTTCCAGACATTATCCGTTCTAAGATTGCTTTCTGGAAGAAGGCAAACTTAATATTCCTTTTCTTTTTGCTGCGAAAGCTTATCCTACCTTTTTATTCGTTTACCCTCTTCTGCATTATCCTTCCTATGACTATGTTCCTGCCAGAAGCTGAATTGCCTGCTTGGGTTGTTTGTTATGTGCCTGCTATTATGTCATTATTGAACATTCTACCTGCACCAAGATCTTTCCCTTTCATTATCCCCTACCTCTTGTTCGAGAACACAATGTCTGTCACTAAATTCAATGCCATGATCTCTGGACTGTTTCAACTTGGTAGTGCTTATGAATGGGTGGTAACAAAGAAATCAGGTCGGGCATCGGAAACCGATCTACTTGCATTGGTTGAAAGGGAATCACATGTTCAGTTAGAGCACCCAAAGCATCATCGTGGTGTTTCAGAGTCAGGTCTGGATGCCCTTAGCAAGCTTGATGAACAAAAGCATCAACAGCCTCCAAAAAAGAAACTCAACCGGATTTACAAAAAGGAACTGGCTCTTGCTTTCCTCCTCTTAACTGCCTCTGCTAGGAGCTTGATGTCTGCTCAGGGGATTCATTTTTACTTTTTACTCTTTCAAGGTATTTCCTTCCTTGTGGTTGGCCTAGACCTGATTGGTGAGCAAACCAGTTGA___CTCTGTGCTGGGGGACTTGAGGCCCTTCATACAAGATTTAAAGACTCTTCAAGTTGAGCAGGCACTGAATAAAAGCAGCTACAGGCCTAGACATACCAGAGTATTATTTCTCAGATATATTAAGGAGTAGGAAAATATGAATTTTGTTCTGACTTCATTGTTTCTATTGAACTGGTGCCACTACGTCCATGCAAAAGCAGCAAGGTCATCACTATATGGATACAGGATTTTTACACTAAACGGCAGCACGTGTTTTTGTTCCTAGAGTTAAAGTACGGATCACCTGGCAAGATCACCAAACCTTCTGAGCATTACGGATCACCTGGCAAGATTAGTACTGCTTCAGCAATATTTTTCTTTTCAATTTGTTTCAGGATTCAACTCTATGATCACCACTTCTTCCTGTAGATTGTTTTTTGTTTTAAGCTACTGCTCTAGCGACATAATTCTTTACTTTCTTTCCTACTCTTCCGATTCTCTATCAGTATTTTTGTGGGAACAATTTTTTCATATAGGCAAATCCTCATTTAAATTTATTGGAGAATGGAATATCTAGAGATGATAAACGAGGGTTACTCTGCCCTCCTTGACAGGTCTATTCACCCATTGTTATGATTTACCATCAAAAGATGTAAATCATATTTGTACATGTAATTGAATCCACTGGGTTAAACCCGTTTGACTATTATTTCCTCAATTTTGGCCTACTTTGGAACCTGATGATGTCAGGATGTTCCACAGAAATGATCTGTCAAGCAATTTTGGCCTACTTTGGAACTTGATGATGTCACTTATAATCCACAGGAATGATCTGTCAACAATTCAGGTACTTTGCAATTGAGTGGGTTTTAGT

Fln Alignment:

sp_v1.1_unigene8747___NGLLQSIYSGWLYTRANYLAPPLQYLANVCIILFLIQSADRALLCVGCFWIKLKKIKPVPKCELGDAADLEQGDNAAYPMVLLQMPMCNEREVYQQSIAAVCNLDWPKDHMLVQVLDDSDDVEVQFLIAAEVQKWQQKGVHIVYRHRVVRTGYKAGDLKSAMNCDYVKDYEFVAIFDADFRPDPDFLKRTVPHFKGNDELALVQARWSFVNRDENLLTRLQNINLSFHFEVEQQRQQRFH*LFWFxxxxAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLDDVKCLCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRSK-IAFWKKANXXXXXXXXXXXXXXXYSFTLFCIILPMTMFLPEAELPAWVVCYVPAIMSLLNILPAPRSFPFIIPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRA
A3QT94______________NDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKDCDYVAIFDADFQPEPDYLWRTVPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFxxxxAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEILRNKRVTPWKKFHVIYAFFFVRKIVAHIVTFTFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDA

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
396		12		87	0.992554
398			87	12	0.992554
403	50	50			1.0
1163		16		83	0.994512
1188	12		87		0.992554
1603	88		11		0.999952
1604	88			11	0.999952
1607			13	86	0.999973
1609	86		13		0.999973
1611		13		86	0.999973
1612	86	13			0.999973
1615		85	14		0.999981
1618			20	80	0.999996
1620		20		80	0.999996
2017		57		42	1.0
2094	25			75	0.996473
2472	92			7	0.999602
2667	66		33		1.0
2681	10	90			0.90298
2682			20	80	0.999996
2684		20		80	0.999996
2685		80	20		0.999996
2687			20	80	0.999996
2688	20			80	0.999996
2692	80			20	0.999996
2693		80	20		0.999996
2694			20	80	0.999996
2700			80	20	0.999996
2904	14		85		1.0
2935		55		44	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain