SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8741

Length: 1149 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8741 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fn3 multi-domain protein	-	-	1.0e-08	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Blast2go	vil1 protein	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Blast2go	Fibronectin, type III	IPR003961	-	67%
Blast2go	Fibronectin type III domain	IPR008957	-	67%
Blast2go	Immunoglobulin-like fold	IPR013783	-	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPI0

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 383 - 575

Fln protein: *RGRY*CDSCLQNYACRAVLSLEDRFCKRCSCCICHKFDDNKDPSVWLVCSSESPSDGVSCGLSCHLECALQHEKSGIAKVAQHMQLDGSYCCPSCGRVSGLMGCWKKQLTIAKEARRVDILCYRISLAQRLLNGTEQFKEPHDIVLRAARKLEEEVGPINGVSSTMARGIVSRLSSGNEVQKLCALAIEKMESLASLVSSPGKDLTLRAEDSLPAACRIEFEGISPTSLVVLFKEIDPKSAQDVIGYKLWHRTSTDLKYPKEISCVLPRTQTRVRISNLRPCTEYAFRIVSYTNRGDLGLSEAKCFTESVEVFRRNIRPSTKQVLKKPGNTGTEDFRSPSAKGELESQPNEGFSSFKVRDLGKIFRAAWVQERDLISKIDCT

Protein Length: 384

Fln nts: TAACGAGGCAGATACTAATGTGACTCGTGTTTGCAAAACTATGCTTGTAGAGCTGTTTTAAGTTTGGAAGATAGATTTTGCAAACGGTGCTCCTGCTGCATTTGCCACAAGTTTGATGACAACAAAGATCCTAGTGTTTGGTTGGTTTGCTCCTCAGAGTCACCCAGTGACGGTGTTTCGTGTGGCTTATCTTGTCATCTTGAATGTGCCCTTCAGCATGAAAAGTCAGGCATAGCTAAGGTTGCACAGCATATGCAGCTAGATGGAAGCTATTGTTGTCCATCTTGTGGCAGAGTCAGTGGGCTTATGGGATGCTGGAAAAAACAGTTGACCATTGCAAAGGAGGCACGGAGGGTGGACATTCTTTGTTATCGTATCTCTCTGGCCCAGAGGCTTCTCAATGGTACTGAACAGTTCAAAGAACCCCATGACATTGTGCTCAGGGCAGCAAGAAAACTTGAAGAGGAAGTGGGACCTATAAATGGGGTATCTTCAACGATGGCTCGCGGCATTGTCAGTAGGCTTTCCTCTGGCAACGAAGTGCAAAAACTTTGTGCACTGGCTATTGAGAAAATGGAATCTTTGGCCTCATTGGTATCTTCGCCGGGAAAGGATTTGACGTTGAGAGCAGAGGATTCCTTACCCGCTGCTTGCAGAATAGAATTTGAAGGAATTTCACCAACATCTCTTGTAGTTTTGTTCAAAGAAATTGATCCAAAGTCAGCCCAAGATGTTATTGGATACAAACTGTGGCACCGTACAAGCACAGACTTGAAATATCCAAAGGAAATTAGTTGTGTTCTTCCCCGAACACAAACAAGAGTTCGAATTTCAAATCTTCGCCCCTGCACAGAGTATGCCTTCAGGATTGTTTCATATACTAATAGAGGGGACTTGGGTCTCAGTGAGGCTAAATGCTTCACCGAAAGTGTGGAAGTATTTCGCAGAAATATTAGACCATCGACCAAACAAGTCCTTAAGAAGCCTGGAAACACGGGTACGGAAGATTTCAGGTCCCCGAGTGCAAAGGGTGAACTTGAAAGCCAGCCTAATGAAGGTTTCTCAAGTTTTAAAGTTAGAGACCTTGGCAAGATTTTCCGTGCAGCTTGGGTTCAGGAACGTGACTTAATTTCCAAAATTGACTGTACT

Fln Alignment:

sp_v1.1_unigene8741___VLSLEDRFCKRCSCCICHKFDDNKDPSVWLVCSSESPSDGVSCGLSCHLECALQHEKSGIAKVAQHMQLDGSYCCPSCGRVSGLMGCWKKQLTIAKEARRVDILCYRISLAQRLLNGTEQF--KEPHDIVLRAARKLE
B8LPI0______________ICCVESGFCRECSCILCGKSIDQELGEYYFVQCEGNQGEDVICGHVAHLECAVICQTAG---VVRSIGLDVEYYCRRCDKKTDLLKHVLGLIPTPELSKTGADFESNLNLALRLVQGTQQLGARILENLFQKAVKKLQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
617		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain