SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8740

Length: 886 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8740 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	D-alanine-D-alanine ligase, putative (EC:6.3.2.4)	-	-	63%
FL-Next	tr=Putative uncharacterized protein Sb02g002970; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	64%
Blast2go	d-alanine--d-alanine ligase family	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: C5X9I9

Fln msg: your sequence is shorter than subject: 264 - 945

Fln protein: LTISKVVRSREELLASSTSDLWHSLTSTLDAPSLCIKPTGDGCSTGVARLCCKEDLEKYVLVLQENHPHILPNTLSKVHGMIMMPDPPAENFIFETFIETDDILVASKHGGSTQSGLLWNGVNRWVEVTVGVMGTKGEMHSFNPSITVKESGDILSLEEKFQGGTGINLTPPPASIIREEALHACKTRIEILANALGLEGFSRVDAFIHVDTGEVLVIEVNTVPGMTPSTVLIHQALAEDPPMYPRQFFRTVTDLALLRSKQN*

Protein Length: 265

Fln nts: TGTTGACTATAAGCAAGGTGGTACGAAGCAGAGAAGAATTATTGGCAAGTTCAACGTCAGATCTCTGGCATAGTCTAACCAGCACGCTCGATGCTCCAAGCCTATGTATTAAGCCTACAGGAGATGGTTGCTCAACTGGTGTTGCAAGATTGTGTTGCAAGGAAGACTTGGAGAAATATGTGCTGGTCTTGCAAGAAAATCATCCACATATCCTTCCCAATACTCTGTCTAAGGTGCATGGTATGATTATGATGCCGGATCCACCTGCAGAAAATTTCATTTTCGAGACTTTTATTGAGACCGACGATATTCTTGTCGCATCTAAACATGGTGGGTCTACACAGTCCGGACTTTTATGGAATGGAGTGAATAGATGGGTTGAAGTAACTGTTGGGGTTATGGGTACTAAAGGTGAAATGCATTCTTTCAATCCTAGCATTACTGTCAAGGAAAGTGGTGACATTCTGTCACTCGAGGAGAAATTTCAAGGTGGAACAGGCATAAATCTTACCCCACCTCCAGCATCCATTATCAGGGAAGAGGCACTTCATGCCTGTAAAACCAGGATTGAGATTTTGGCAAATGCTTTAGGTCTGGAAGGATTTTCCCGTGTTGATGCATTTATCCATGTGGATACtGGAGAGGTGTTGGTAATAGAGGTGAACACTGTACCTGGAATGACTCCTTCCACTGTTTTAATACATCAGGCACTCGCTGAAGATCCCCCGATGTATCCTCGACAATTTTTCAGGACTGTTACTGACTTAGCTTTATTGCGGTCCAAACAAAACTAA___ATATCCTTTGGAACCAAGATGGTACTACTATATTTTCAAGGTAGGTGGAGAGTCATATCAATCCACTATAGAGAATTGTTAGGCTTATCAGA

Fln Alignment:

sp_v1.1_unigene8740___TISKVVRSREELLASSTSDLWHSLTSTLDAPSLCIKPTGDGCSTGVARLCCKEDLEKYVLVLQENHPHILPNTLSKVHGMIMMPDPPAENFIFETFIETDDILVASKHGGSTQSGLLWNGVNRWVEVTVGVMGTKGEMHSFNPSITVKESGDILSLEEKFQGGTGINLTPPPASIIREEALHACKTRIEILANALGLEGFSRVDAFIHVDTGEVLVIEVNTVPGMTPSTVLIHQALAEDPPMYPRQFFRTVTDLALLRSK
C5X9I9______________TIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCSTGVARLCCPKDLEVYTNALRRKFQHLPANCLSRAHGVIEMPVPPPESLIFEPFIETDEIIISNKLGNGSARHLVWKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEKFQGGTGINLTPPPATIMGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQALAEEPPVYPHKFFRTLLDLAFTRAK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
249	50	50			1.0
366		50		50	1.0
370	50	50			1.0
716			20	80	0.995493
717	20	80			0.995493
718			20	80	0.995493
719		80		20	0.995493
720		80	20		0.995493
725		20		80	0.995493
727	20			80	0.995493
728	20			80	0.995493
729		80	20		0.995493
730		80	20		0.995493
732		20		80	0.995493
733	20		80		0.995493
735	80		20		0.995493
738	80		20		0.995493
739		50		50	1.0
786	75	25			0.996473
787		25		75	0.996473
789			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain