SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8732

Length: 1444 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8732

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Inducer of CBF expression 1 n=1 Tax=Glycine max RepID=B8XJY5_SOYBN	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	inducer of cbf expression 1	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	75%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A934

Fln msg: your sequence is longer than subject: 283 - 175

Fln protein: MKRAPMAIAIAMLKGKRKLMSVGADKKEEEDVDESNDGSGVQYDSDDVGGNNNSSYKGDQIGEDGLASAGGTGNAAAVNNNSNGGGDKGKKKGLPAKNLMAERRRRKKLNDRLYMQPTVAPKNSKMDRASILGDAIEYLKELLQKINDLHNELESTSQGPVLPGASNFHPLTPTTPSLPCRVKEECPTSLPSPNAQPARVEVRMREGHALNIHMFCARRPGLLLSTMRALDGLGLDVQQAVISCFNGFALDVFRAEQAKEGEIAPEEIKAVLLHTASCHTAI*

Protein Length: 284

Fln nts: ACAACCCCTTGCATTGAAGTGCTCG_-_ATGAAGAGAGCCCCAATGGCAATAGCAATAGCAATGTTGAAAGGGAAGAGGAAGTTGATGTCGGTGGGTGCTGATAAGAAAGAAGAGGAGGATGTGGATGAAAGCAATGATGGGTCTGGGGTTCAGTATGATTCGGATGATGTGGGTGGTAACAATAATAGTAGTTATAAGGGCGACCAGATTGGGGAAGATGGCTTGGCCTCTGCAGGAGGCACTGGGAATGCTGCTGCTGTTAATAACAATAGTAATGGCGGTGGAGATAAGGGCAAGAAGAAGGGCTTGCCAGCTAAGAATCTGATGGCCGAACGAAGGCGCCGAAAGAAGCTCAATGATAGGCTTTACATGCAACCAACGGTCGCCCCTAAGAACAGCAAGATGGATCGAGCCTCTATTCTGGGAGATGCAATTGAGTATTTGAAAGAGCTTCTTCAGAAGATAAACGACCTTCACAATGAGCTTGAATCAACGTCTCAGGGACCTGTTTTACCTGGTGCATCTAATTTCCATCCTTTGACACCTACAACACCTTCTTTGCCTTGCCGAGTGAAAGAAGAGTGTCCAACTTCACTTCCCAGTCCCAATGCACAGCCTGCAAGGGTGGAAGTTCGGATGAGGGAAGGGCATGCCCTAAATATCCATATGTTTTGTGCTAGACGGCCTGGACTGCTACTCTCCACCATGAGGGCACTGGATGGGCTTGGGCTTGATGTTCAGCAAGCAGTAATCAGTTGCTTCAATGGATTTGCACTAGATGTATTTCGGGCAGAGCAAGCTAAAGAAGGAGAAATTGCACCTGAGGAGATCAAAGCTGTGCTGCTACATACTGCAAGCTGTCATACTGCAATATAG___CCTAAAGAATGCCCATGGCTGCGGAATATGTATATTATGACATAACTTCTCAAATTGCTCTGACCCAGCTGATGTGCTTGGAAATTATCAAATTAAGCATCTTATGGGGATGGCAACTGTCCACTGATGTCAATCTGGAGTTGTTACGAGTAATCATGCAACATCAACAGGAGACCGTTCTGTGATTGTTCCAAGTCCTGGGCTGAGAATTGCTTCTAATATGTTCCGATTCTAAGAGGTCTATTTAGAATTATATCTCCTTCATCCCCAAAAGCTGGAAGTTTGGCATCTGAACATACAAGCGATGTCCTTATTTTACTTGCTCTATGTATTGTTGGTTTTCTTTCACATGAGAAATGCAAACAGATGGTGGTCTTTTTGTAAACAAGTTCTTTGCAAAGAGTTGGGCAGCTGCAGGCATTACTTTCTTAAATGAAACTATCATTATTTCATTTGAACACTTGGTAGAATGTACTGTCTTGCTGGAAGGACTCGAAGGTAAAACGAATTTACCTTCTTGGAAATGAAGGAATCAAGTTCCTCCGTTTGGAGACATATTTAGAGTGTACC

Fln Alignment:

sp_v1.1_unigene8732___MAERRRRKKLNDRLYMQPTVAPKNSKMDRASILGDAIEYLKELLQKINDLHNELESTSQGPVLPGASNFHPLTPTTPSLPCRVKEECPTSLPSPNAQPARVEVRMREGHALNIHMFCARRPGLLLSTMRALDGLGLDVQQAVISCFNGFALDVFRAEQAKEGEIAPEEIKAVLLHTA
D5A934______________MAERRRRKKLNDRLFMLRSVVPKVSKMDRASILGDAVEYLKELLQRINDLHIEL--------MAGSSNSKPLVPTMPDFPYRMNQESQASLLNPEVEPATVEVSTREGKALNIHMFCSKKPGLLLSTMRALDELGLDVKQAIISCLNGFALDVFRAEQSMGGDVTAEEIKALLLHTA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
331	80		20		0.995493
510	33			33	0.997753
971	88		11		0.999937
991	89			10	0.999919
996		84		15	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain