SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8730

Length: 1742 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8730

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-hydroxybutyryl-CoA dehydratase, putative (EC:4.2.1.17); K05605 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	3-hydroxyisobutyryl-coenzyme a expressed	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280	75%
Blast2go	beta-Alanine metabolism	00410	75%
Blast2go	Propanoate metabolism	00640	75%
Blast2go	Metabolic pathways	01100	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	61%

Source	KEGGs	Term	Identity
AutoFact	Valine, leucine and isoleucine degradation	00280	61%
AutoFact	beta-Alanine metabolism	00410	61%
AutoFact	Propanoate metabolism	00640	61%
AutoFact	Metabolic pathways	01100	61%

Source	GOs	Term	Type	Identity
Blast2go	xanthophyll biosynthetic process	GO:0016123	Biological Process	75%
Blast2go	response to cold	GO:0009409	Biological Process	75%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	75%
Blast2go	valine catabolic process	GO:0006574	Biological Process	75%
Blast2go	carotene metabolic process	GO:0016119	Biological Process	75%
Blast2go	3-hydroxyisobutyryl-CoA hydrolase activity	GO:0003860	Molecular Function	75%
Blast2go	carotene beta-ring hydroxylase activity	GO:0010291	Molecular Function	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVZ0

Fln msg:

Fln protein: MASTSVENQILTEDNLHSRTIVLNRPRQLNALSDFMISRIQELHLKWENDDNVNLVIIKGIGRAFCSGGDVAEICRLGNAGNYSRSAYYFWLEYIMNYILGTYRKPQVALLNGIVMGGGAGISMHGKFRVATENTLFAMPETGLGLHPDVGASYFLSRLPGFLGEYVGLTGVRLNGAELLACGLATHFVHSTRLPLLEETLAKVETTDPNIISSVIDGLSDKVPVKDGSALQRLEIIEKCFSKETVEDIISALELEAKYVADQWLKSSIQSMKKASPVSLKISLRSIREGRRQQLHECLVREYRMTCHIIFRKISSDFYEGCRAILVDKDRNPKWRPDKLEHVSQDMVDHYFSPIGAGLKDLELPIYQRESITHSPVQSKL*

Protein Length: 383

Fln nts: ATGGGGGAATAAGTTATTGATTTCAATCAAGAAAGAAAGAGTTACCATAATTCTTATAGTTCTCATGTGAACGTTTGACGGCCTTCATGCTCGGATAAAACAATTACATTCATCTTCCCTTCTATCTTCTCCGCTTCCAGTGCCGCGAACAGAAGATCGTTTCCTTGGCCAGAGAAACGCTTGGAATTTCCAGGTAATAAGATTTGGAACACTGTC_-_ATGGCATCGACTTCAGTTGAAAATCAGATTTTAACAGAAGACAACCTTCATTCAAGGACAATAGTACTGAATAGGCCCCGCCAACTTAATGCGCTCTCAGACTTCATGATCTCTCGAATTCAAGAGCTGCACTTAAAGTGGGAGAATGATGACAATGTCAACTTAGTAATTATCAAGGGCATAGGAAGGGCATTTTGTTCTGGTGGTGATGTTGCAGAAATTTGCCGTCTAGGAAATGCAGGTAACTACAGTCGGTCTGCATACTATTTCTGGCTTGAATATATCATGAACTATATACTCGGAACATACAGAAAGCCCCAAGTTGCTTTGCTAAATGGGATTGTCATGGGAGGAGGTGCTGGCATTTCCATGCATGGGAAGTTTCGAGTGGCGACAGAGAACACTCTCTTTGCAATGCCAGAAACAGGATTGGGACTGCACCCTGATGTTGGTGCATCATATTTCTTATCAAGACTTCCAGGATTTTTGGGTGAATATGTAGGATTGACGGGTGTGAGATTGAATGGAGCAGAATTGCTTGCTTGTGGCCTTGCAACCCACTTTGTGCATTCCACGCGGTTGCCTTTGTTGGAAGAAACTTTAGCCAAAGTTGAGACAACGGATCCAAATATTATTAGTTCAGTGATTGATGGATTGTCTGATAAAGTACCCGTGAAAGATGGGAGTGCATTACAAAGGTTGGAGATAATTGAAAAGTGCTTTTCAAAGGAAACCGTGGAGGATATCATTTCTGCTCTTGAGCTTGAAGCTAAATATGTCGCTGATCAATGGCTAAAGTCAAGCATTCAATCAATGAAGAAAGCATCACCTGTCAGCCTCAAAATTTCTTTACGATCGATAAGAGAAGGCAGGAGGCAACAACTTCATGAGTGCCTGGTTCGAGAATACAGAATGACTTGCCATATCATTTTTCGGAAAATTTCCAGTGATTTCTATGAGGGTTGCCGAGCGATCTTGGTTGACAAGGATAGAAATCCAAAGTGGAGGCCTGACAAGTTAGAGCATGTCAGTCAAGATATGGTTGATCATTACTTCTCCCCAATAGGTGCGGGTTTAAAAGATTTAGAACTACCTATATATCAAAGAGAATCAATTACCCATTCTCCTGTTCAATCAAAGCTGTAA___GGAAAGTTCAACTAGACTTCTGGAAAGGTCGAGAAGGTGTTTCATTCCAAGTTACAACTTTTCCTTGTTGGGGAAAACAAGGTAGTGGAGAGATGTTTTAAGTGCTCTCCTCTAATATATGCAAGTCCTCAATCTCTATCAGCTGTCCCATCACTTTTGGGCATTTTTAAACATCAGTAAAATTAAACTTTAAATAATTAAGATGACCTTTGGAATGGATGTACATTCACATAAAAATATACCACAAACTATTATATAAGATAGAGTTGAAATAAGATGAACAATGTAAATAAGCTTTGCTGAACTGCCATGTCTTTCCTCTACTCTTTATTTATCAATCATGATGTTATAATGCTATATATGATTTTTTATCTGGGATT

Fln Alignment:

sp_v1.1_unigene8730___ILTEDNLHSRTIVLNRPRQLNALSDFMISRIQELHLKWENDDNVNLVIIKGIGRAFCSGGDVAEICRLGNAGNYSRSAYY--FWLEYIMNYILGTYRKPQVALLNGIVMGGGAGISMHGKFRVATENTLFAMPETGLGLHPDVGASYFLSRLPGFLGEYVGLTGVRLNGAELLACGLATHFVHSTRLPLLEETLAKVETTDPNIISSVIDGLSDKVPVKDGSALQRLEIIEKCFSKETVEDIISALELEAKYVADQWLKSSIQSMKKASPVSLKISLRSIREGRRQQLHECLVREYRMTCHIIFRKISSDFYEGCRAILVDKDRNPKWRPDKLEHVSQDMVDHYFSPIGAGLKDLELPIYQRESIT
A9NVZ0______________VLDEEKGRVRVVTLNNPRKLNIISREVVIRLTEIYEKWEKENDAEMIIIKGAGRAFSAGGDL-RVFYYGKADKHVIEAVYKMYWLQYHIH----TYKKTLVAIVNGLAIGGGASITVASTFKVVTEKTVLSAPEAGFGFHTDASLSYILSHLPGHLGEYLALTGARLDGAEMIATGLGTHYIPSEKLEDLEKRLVDLNSGDRNIVRAAMEEFSLQVQPGEKSILYNRSLIAKCFSKDTVEEIIETLIAENNMEGNEWVKDTIQNLKRSSPTGLKMTLRSVRQARKQTLSECLKKEFRLTINTLRGVISNDIYEGMRALVIDKDNSPKWNP-PLSEVTEEKLDLVFSSFE---EEFELQLPQEEKIS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
132		77	22		0.999999
133			22	77	0.999999
134			22	77	0.999999
181	77		22		0.999999
279	12		87		0.992554
535	90	10			0.90298
536	90	10			0.90298
806		80		20	0.995493
842		75		25	0.996473
861		50		50	1.0
957		66		33	0.997452
1080			85	14	0.993533
1214	10		90		0.991528
1292	14	85			0.999986
1386	5	11		82	0.999919
1508		81	18		0.999994
1669		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain