SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8717

Length: 1658 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8717

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SKIP4 (SKP1 INTERACTING PARTNER 4) [Arabidopsis thaliana] sp\|Q9M2C9.1\|SKIP4_ARATH RecName: Full=F-box/kelch-repeat protein SKIP4; AltName: Full=SKP1-interacting partner 4 emb\|CAB71065.1\| putative protein [Arabidopsis thaliana] gb\|ABF18998.1\| At3g61350 [Ar	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kelch repeat type 1	IPR006652	-	0.0	63%
Blast2go	Galactose oxidase, beta-propeller	IPR015916	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P298

Fln msg:

Fln protein: MSEHIYMEYCKQPDSDNASQVENTRVQFDSDFRHSDSELIPGLPRDIGILCLARVPRRDHQLLKCVSKKWRDFLSSELYFYRQRLGIADGWIYALCRDSSECVHCYVLDPGRRKWKKLPALPYPCSKRYGMTCEVLGRKLYLLGGCGWTEDATNEVNCYDPLLNKWQKVANMRTARCHFVSGSNDGNLYAIGGIGSNSGALSSWETYDSEANESTSHEDWNIFPDLGESLACDGRIYIRHVSTNVFPDVYAAVYDTSNEVWSAVDNEMTMNWYGPAVVVGDDVYMLDQTAGIKLMILDKENQSWVSLGRISLNLIKTPCKITAIGTMLFVIGRGLQTLMLDLEKVGRVRGTLMTTSIPGLGSVDDIIISCKTIAI*

Protein Length: 377

Fln nts: AAGAAGAAGCTCATTTTAAGGTCTATATTGTTTTTCTTGCGTCATACACCCTTTTCTGGACTTTATTCAACGTTAAATCGGAGAAAGCCGAGAGCTAATCaTCCAGTTTGGCcGCCTGAtgTACCCAAATaGACCCTTTCTAcCCTGGTCTtgTCaTGACCTctgCTGaCctgCATTCATGCATAGCCGCCATCGAATGAAGCCCTAATTTATCAGAGACCGTGGAGCGCAATATCTGATTCCGCCGCTGGGTTGATGTGCAGTAGTC_-_ATGTCAGAACACATCTATATGGAATATTGCAAGCAGCCAGACTCAGATAACGCATCACAAGTTGAGAACACAAGAGTTCAATTTGATTCTGATTTTAGGCATAGTGATTCTGAATTGATTCCTGGTCTTCCTCGTGACATTGGAATTCTCTGCCTAGCAAGGGTGCCTCGTAGAGATCATCAGCTTCTAAAATGTGTTTCTAAGAAATGGAGGGATTTTTTATCCAGTGAACTGTATTTCTATCGTCAAAGGTTGGGAATTGCAGATGGTTGGATTTATGCACTATGTAGAGATAGCTCTGAATGTGTTCATTGCTATGTGCTTGATCCTGGAAGACGAAAGTGGAAGAAGCTCCCTGCTCTGCCCTATCCATGTTCAAAGAGATATGGGATGACGTGTGAAGTTCTGGGAAGGAAACTCTACCTGCTTGGTGGCTGTGGTTGGACTGAAGATGCGACCAATGAGGTCAACTGCTATGATCCTTTACTAAACAAGTGGCAGAAAGTTGCAAACATGCGGACAGCAAGGTGCCATTTTGTGAGTGGATCCAaTGATGGGAACCTCTATGCAATTGGGGGAATAGGATCTAACTCAGGGGCACTGTCTTCATGGGAAACATATGATTCAGAAGCAAATGAATcGACATCCCATGAAGACtgGAATATTTTTCCAGACCTTGGGGAATCATTGGCTTGTGATGGTAGAATATATATCAGGCACGTCAGTACAAATGTATTCCCAGATGTTTATGCAGCTGTATATGACACATCCAATGAGGTATGGTCTGCTGTTGATAATGAAATGACCATGAATTGGTATGGTCCTGCAGTAGTGGTGGGAGATGACGTCTACATGTTAGATCAAACTGCAGGTATTAAACTGATGATATTAGATAAGGAAAATCAAAGCTGGGTATCTCTTGGAAGAATATCACTTAATTTGATAAAAACACCATGTAAGATTACAGCTATCGGGACCATGCTTTTTGTTATAGGGAGGGGTCTGCAGACTCTGATGCTAGACTTGGAGAAAGTAGGAAGGGTCAGGGGAACATTGATGACAACTTCTATTCCTGGATTGGGCTCTGTGGATGATATAATTATTAGTTGCAAAACCATTGCAATTTGA___GAAATGCCAAAATTGTTATACACTACAACTGCTGCATGCCAAAGAGTCAATTTATATTGTTGCAACTTCCAACTGATTACTGTCTACGTAGCCCAAGGGGTTAGCTCAACTGGATGTTAGCAATATTGCTGGGCATTTGGCTAGTTCTGTGTTGTCAGGTGCCCAGTTCGAATCCCAGTCTAGGTTGGTGGGTTTACTAGGGATGTCATCCGCAAGAGTTGGTAAGCATCCCCTGGGTTTTCCCACGAAGTTTTCAATTGGG

Fln Alignment:

sp_v1.1_unigene8717___MEYCKQPDSDNASQVENTRVQFDSDFRHSDSELIPGLPRDIGILCLARVPRRDHQLLKCVSKKWRDFLSSELYFYRQRLGIADGWIYALCRDSSECVHCYVLDPGRRKWKKLPALPYPCSKRYGMTCEVLGRKLYLLGGCGWTEDATNEVNCYDPLLNKWQKVANMRTARCHFVSGSNDGNLYAIGGIGSNSGALSSWETYDSEANESTSHEDWNIFPDLGESLACDGRIYIRHVSTNVFPDVYAAVYDTSNEVWSAVDNEMTMNWYGPAVVVGDDVYMLDQTAGIKLMILDKENQSWVSLGRISLNLIKTPCKITAIGTMLFVIGRGLQTLMLDLEKVGRVRGTLMTTSIPGLGSVDDIIISCKTIAI
A9P298______________MESCKQPDLDNALHFEKTRGQYDSDFGDTDSELIPGLPHDIGILCLARVPRRDHQLLKCVSKKWRDFISSELYFYRQRLGIADGWIYAVCRDSSECVHCYVLDPARRKWKKLPGLPYACSKRFGMTCEVLGRKLYLLGGCGWTEDATNEVYCYDPLLNKWENVANMETARFHFVSGASDGCLYAIGGMGSNSEALTSWETYDSEANKWTSHEDLNILPDLGESLAFDSRIYIRHISTNVFPATYAAVYDTSNDVWSPVDNEMTMNWCGPAIVVGDDVYMLDQTAGIKLMMLDKENQSWVSVGRISTYLIKTPCRITAIGNTLFVIGRGLQTLMLDLDKVGRVKGTLMTTSIPGLDSVDDIIVSCKTIAI

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
101		66		33	0.997452
113			25	75	0.996473
114			75	25	0.996473
116		75	25		0.996473
120		25		75	0.996473
121		25		75	0.996473
123	75			25	0.996473
124		75	25		0.996473
125		75	25		0.996473
127	75			25	0.996473
128	75		25		0.996473
131		25	75		0.996473
135		75		25	0.996473
144			50	50	1.0
153	57	42			1.0
154			42	57	1.0
157			42	57	1.0
164	57			42	1.0
165			42	57	1.0
166		57	42		1.0
170	57			42	1.0
172	42		57		1.0
173		42	57		1.0
174			57	42	1.0
366	77		22		0.999999
368			55	44	1.0
427		83		16	0.994512
939		33		66	0.997452
1209		75		25	0.996473
1210			25	75	0.996473
1211		25	25	50	0.995533
1212	25		25	25	0.997389
1340			30	70	1.0
1343			30	70	1.0
1344	70			30	1.0
1345			30	70	1.0
1346	30			70	1.0
1350			70	30	1.0
1352	70		30		1.0
1353		30		70	1.0
1356			70	30	1.0
1357		30	70		1.0
1362	30			70	1.0
1648		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain