SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8706

Length: 1963 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8706
ATTACCAAAAGGGACTGGCAAAACTGTTCGTTGCATATATATATCTCCTCACCATAGATCCAGTTTGGCAGGCCAGTTACTTGTAAATCAGATAGCCCATTTCTCAGATTCGGAGTTCTAGAGATGGATGAGGTAAAGGGCAAGGTCAAGGATTTTATGAAGAAAATAAACAACCCATTTGCCTCTTCTTCTTCTTCTGGAAAATTCAACGTCGTGACCTTGGCTGTCACTCATCATCTTCGTCTTCCTCGTCGAATCAGAAGCCAACCTCCACAATACAAAGGCCTCAGCAATCGGCAGCCCCAACCCCATCATTGGTCAGCAAAGGCATCATCACGAAACAAAACAATACAGGTAATTCGAAAGAACCCATTGGAAAAGACCTCTCAGAGTCCTTATCCCTTAATCAATCTGAACCTAAAATTAGAGACGGAGTTGACCCATTTAATTCTAAGGCAGATGGATTTGACCCATTTGATACTCTCGTTTCATCTACAAGAGGACCCAAATCAGGGACATCCTTGGATATGTTTCAATGCCCTGTTTGCAGTAAGTGGTTTAATTCAGAGAATGAGGTTTCCGCCCATGTTGAGAATTGCTTGGAAAACAACCCAACTGATGAGGCTGAAAAAAATCCGTCAGAGGGCAAATCAGAAGCAAGGGATGAACTAGTAAATCAGGTGGGCATCTTTGTGTCTGGAAATCCCTCTAATGCGACTTTTGAGATCATTCTGAAGCTGCTTAGGAATATTATCAATGATCCCCGTAACGAAAAGTTTCGCAGAATTAGGATGAGTAACCCTAAAATTCAAGAAACTGTTGGCATGGCTGTTGGTGGTGTAGAACTATTGGAAGCTATTGGTTTTAAGTTCCAAGCAGAAGGAGAACATGTATGGGGTGTTATGGAAATACCGTCCACAGAGGGATTGAGTGTCATTACTCATGCAATTGCTCTTTTGGAACCTCACGTTCTCAGTCCCATATCATCGTCATCGGTTTCATCAGATCGTCAAAAAAGTGCTTCTGCGGAACCAAAGAAAATTGACAGACAGGTGCGTGTATTTTTTGCTGCTCCAGAAAGTATGGCTGCTAGGATTGAACTTCCAGATTCTTTCTATGACCTTTCAGCTACAGAAGCGAGAAGAGAAGCTGAATCAAGGAAGAAAAAGATTGAAGATTCCCAACTTTTGATTCCAAAATCTCTCAAAGAAAAGCAGGCAAAATCTGCACGGAAGAGATATAAAGCCACTGTAATTCGAATCCAGTTTCCGGATGGGGTAATCCTACAAGGTGTTTTCCTTCCAGAAGAGCAAACAACTGCTCTTTATGAGTTCGTGGGATCGGCATTAAAAGAAGGATCCCTGGAGTTTGAGCTGCTGACACCAGCATTGCCGAAAAGACGAGTAATTCCACGTTTTGCAAAACCAGGTGAGCGAATGCCAACACTGGACGATGAGGATCTGGTTCCGACTGCTCTTATAAAATTTAAACCAATTGAAACAGATTCCATCGTTTTTACTGGTCTCTCCAGTAATCTCCTCGAAATCAGCGAGCCACTTACATCAGAAGCATTTCCAAGCGGAGGGGGATTTGTACCTGGTTTGTAAGGGATCAAAGTTGTTTGTATTCATTGTCTGGAGTGATGTGGCTGTAATTACTTAAATAAGTTGCTCATTATGGAGTAATGTGGCTGTAATTACTTATTTAAGTTACTCCTTATGTCATTCATTCTTTCAAGGGCATCCCTGATTTGTTTATATTAAATATTTACAGTGAGATGCAATGGTAGTGACAATATCATGCTGGGTTCCATGCACTTATCGGTTTGTTATTTCGATATGGCAACATTATTGCTGATGTTATTGCATACATTGTGGGGGATAGACTTCAATATTAGAACTTGCTGAGGGTGTAACTTATGATATTTAAAAAAATAAATATATTAAATAACAAGTAGTTTTAA

Ace file of the UniGene sp_v1.1_unigene8706

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CDC48-interacting UBX-domain protein n=3 Tax=Arabidopsis RepID=Q9ZU93_ARATH	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	nucleic acid binding	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	UBX	IPR001012	-	65%
Blast2go	PUG domain	IPR006567	-	65%
Blast2go	PUB domain	IPR018997	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT9

Fln msg: your sequence is longer than subject: 360 - 247

Fln protein: MFQCPVCSKWFNSENEVSAHVENCLENNPTDEAEKNPSEGKSEARDELVNQVGIFVSGNPSNATFEIILKLLRNIINDPRNEKFRRIRMSNPKIQETVGMAVGGVELLEAIGFKFQAEGEHVWGVMEIPSTEGLSVITHAIALLEPHVLSPISSSSVSSDRQKSASAEPKKIDRQVRVFFAAPESMAARIELPDSFYDLSATEARREAESRKKKIEDSQLLIPKSLKEKQAKSARKRYKATVIRIQFPDGVILQGVFLPEEQTTALYEFVGSALKEGSLEFELLTPALPKRRVIPRFAKPGERMPTLDDEDLVPTALIKFKPIETDSIVFTGLSSNLLEISEPLTSEAFPSGGGFVPGL*

Protein Length: 361

Fln nts: ATTACCAAAAGGGACTGGCAAAACTGTTCGTTGCATATATATATCTCCTCACCATAGATCCAGTTTGGCAGGCCAGTTACTTGTAAATCAGATAGCCCATTTCTCAGATTCGGAGTTCTAGAGATGGATGAGGTAAAGGGCAAGGTCAAGGATTTTATGAAGAAAATAAACAACCCATTTGCCTCTTCTTCTTCTTCTGGAAAATTCAACGTCGTGACCTTGGCTGTCACTCATCATCTTCGTCTTCCTCGTCGAATCAGAAGCCAACCTCCACAATACAAAGGCCTCAGCAATCGGCAGCCCCAACCCCATCATTGGTCAGCAAAGGCATCATCACGAAACAAAACAATACAGGTAATTCGAAAGAACCCATTGGAAAAGACCTCTCAGAGTCCTTATCCCTTAATCAATCTGAACCTAAAATTAGAGACGGAGTTGACCCATTTAATTCTAAGGCAGATGGATTTGACCCATTTGATACTCTCGTTTCATCTACAAGAGGACCCAAATCAGGGACATCCTTGGAT_-_ATGTTTCAATGCCCTGTTTGCAGTAAGTGGTTTAATTCAGAGAATGAGGTTTCCGCCCATGTTGAGAATTGCTTGGAAAACAACCCAACTGATGAGGCTGAAAAAAATCCGTCAGAGGGCAAATCAGAAGCAAGGGATGAACTAGTAAATCAGGTGGGCATCTTTGTGTCTGGAAATCCCTCTAATGCGACTTTTGAGATCATTCTGAAGCTGCTTAGGAATATTATCAATGATCCCCGTAACGAAAAGTTTCGCAGAATTAGGATGAGTAACCCTAAAATTCAAGAAACTGTTGGCATGGCTGTTGGTGGTGTAGAACTATTGGAAGCTATTGGTTTTAAGTTCCAAGCAGAAGGAGAACATGTATGGGGTGTTATGGAAATACCGTCCACAGAGGGATTGAGTGTCATTACTCATGCAATTGCTCTTTTGGAACCTCACGTTCTCAGTCCCATATCATCGTCATCGGTTTCATCAGATCGTCAAAAAAGTGCTTCTGCGGAACCAAAGAAAATTGACAGACAGGTGCGTGTATTTTTTGCTGCTCCAGAAAGTATGGCTGCTAGGATTGAACTTCCAGATTCTTTCTATGACCTTTCAGCTACAGAAGCGAGAAGAGAAGCTGAATCAAGGAAGAAAAAGATTGAAGATTCCCAACTTTTGATTCCAAAATCTCTCAAAGAAAAGCAGGCAAAATCTGCACGGAAGAGATATAAAGCCACTGTAATTCGAATCCAGTTTCCGGATGGGGTAATCCTACAAGGTGTTTTCCTTCCAGAAGAGCAAACAACTGCTCTTTATGAGTTCGTGGGATCGGCATTAAAAGAAGGATCCCTGGAGTTTGAGCTGCTGACACCAGCATTGCCGAAAAGACGAGTAATTCCACGTTTTGCAAAACCAGGTGAGCGAATGCCAACACTGGACGATGAGGATCTGGTTCCGACTGCTCTTATAAAATTTAAACCAATTGAAACAGATTCCATCGTTTTTACTGGTCTCTCCAGTAATCTCCTCGAAATCAGCGAGCCACTTACATCAGAAGCATTTCCAAGCGGAGGGGGATTTGTACCTGGTTTGTAA___GGGATCAAAGTTGTTTGTATTCATTGTCTGGAGTGATGTGGCTGTAATTACTTAAATAAGTTGCTCATTATGGAGTAATGTGGCTGTAATTACTTATTTAAGTTACTCCTTATGTCATTCATTCTTTCAAGGGCATCCCTGATTTGTTTATATTAAATATTTACAGTGAGATGCAATGGTAGTGACAATATCATGCTGGGTTCCATGCACTTATCGGTTTGTTATTTCGATATGGCAACATTATTGCTGATGTTATTGCATACATTGTGGGGGATAGACTTCAATATTAGAACTTGCTGAGGGTGTAACTTATGATATTTAAAAAAATAAATATATTAAATAACAAGTAGTTTTAA

Fln Alignment:

sp_v1.1_unigene8706___PDSFYDLSATEARREAESRKKKIEDSQLLIPKSLKEKQAKSARKRYKATVIRIQFPDGVILQGVFLPEEQTTALYEFVGSALKEGSLEFELLTPALPKRRVIPRFAKPGERMPTLDDEDLVPTALIKFK----------PIETDSIVFTGLSSNLLEI--------SEPLTSEAFP
A9NWT9______________PDDFYEFTTEDYIRLLASKKQE----SILKTKKLRDAELAACRAKITKAVIKVQFPDDYLIETTFHPSETISMLMDLLKKVIAQPDVPFYIYTTP-PKKRIT-------DLTKDFYSANLVPGALVRFHYDVPEEEEKGPFLRDDIMALRDLHSLLEAKEAEKPAESEPLAAEPPP

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
326	90	10			0.90298
327	90			10	0.90298
328	90			10	0.90298
335	90		10		0.90298
340			90	10	0.90298
341	90	10			0.90298
378	50		50		1.0
422	90			10	0.90298
423	90		10		0.90298
424	90		10		0.90298
425	90	10			0.90298
430	90			10	0.90298
431		10	90		0.90298
434			90	10	0.90298
435		10	90		0.90298
437			90	10	0.90298
500	83		16		0.999991
502	81		18		0.999994
510	63		36		1.0
546	25			75	1.0
636	80		20		0.995493
1133	12		87		0.992554
1199	88			11	0.923564
1200	88		11		0.923564
1201	88		11		0.923564
1202			11	88	0.923564
1215	88		11		0.923564
1253		10	90		0.90298
1254	10			90	0.90298
1315	90			10	0.90298
1316	90		10		0.90298
1317		90	10		0.90298
1365		12		87	0.992554
1380		12		87	0.992554
1434	90		10		0.90298
1445	90	10			0.90298
1554	90		10		0.90298
1559		90		10	0.90298
1617	80			20	0.995493
1733		70	29		1.0
1819		84		15	0.999986
1830	12		87		0.992554
1831	12			87	0.992554
1832			12	87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
184	198	TCT TCT TCT TCT TCT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain