SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8682

Length: 2106 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8682
GAAAAAGAAAAAATTGCAGAGATTTTTCAGATTTTCTGGGTTTTTCCTACCAACACCAACGATGGTAGTCGGCTTTTTCCAGAAATATGGAGCAAGTTTGCTGCTGTTGGCTTTATCCATGGCCGCCGGAATTGCCTCTGCAGATGACGAAAGCCCAGTAGCGACCTGCTCTGCAAAAGATAAAGAAGCTCTCCTGAGCTTCAAGGCCGCCATTACCGAAGACACGACGGAAACTCTGATCACCTGGACGCCGGGCACCGATTGCTGCGGGGGAGGCTGGGCCGGAATCGAATGCGATGCGAGCAGCGGGAGGGTCACCCAACTGGTGCTGCAAAACCCGGAAGAAACGAACGCCACAATGTACATGCGCGGAACTGTGTCGCCATCTCTGGGTAATCTCAATTCTCTGCAAATTTTGATCATTAGCGGACTGAAGCAGATAACGGGGCCGATCCCGGGGTCTCTCTCTAACCTACCATGGCTAACGCAGCTGTACATCGAGAAAAATCAGGTCACGGGTTCGATTCCCGGGACGCTCGGGAGACTCTCGAAGCTCCAAGCGCTTTCTTTCGCGGGGAACAGTCTCTCCGGCCCGATTCCCCCAGAGTTCGGCTTGCTCCGGTCTCTACTTCAGCTCAACCTCGGCAAGAACCGTCTGACAGGCGTCCTGCCAACGGCTCTAAAGAATATCCGCGGCTTGCAATCTTTGGATACCAACGGTAATATTCTTTCCGGGCCAATTCCGGCCTTCATCGGCTCGTTTTCCAATCTAACATATCTGGACCTCTCTGACAATGAATTCGACAGGCCCAATTCCTGGTTCTCATTTCTGAATTATCCGCCATACAAGACCTATCTCTAGCTCGAAATCGACTAACAGGCAAGATTCCATACTCTCTGGGTCAGATGAATTCTCTTGCTAGCCTTTCTCTCAGTGAAAATATGCTTGTAGGAGTTATTCCTGAATCTATCAGTAAAATGTCCAAGTTATGGTATCTGAATCTTTCAAAAAACCATTTGTCTGATCCCCTTCCCTCTGGCCTAGCCAAAGCCTCTGCTCTACTGTGCCTTGATCTGTCTTACAATAATCTGCATCTGGGTAGGATTCCAGACTGGATAACCAGAAAAGAGATGACAAATCTTCACCTTGCAGGCTGTGGGGTCAAACAATGTCTGAGCACATGGAAACCTATTGCCATGAATTCCTTGCTGAGTTCCATTGATCTTTCTAACAACAATCTTACAGGAGATATAAGTCACCTTCTGAAGAACATGACAAGCCTGGAAAAAGTTTATCTCTACAACAACAGTCTCACCTCCAACCTCTCTGAGGTTTCCCTGCCGGATTCTATCTCAGTTCTTGATCTTCACTCAAATAAATTGTATGGGTCTATAGAGAAACTCTTCAGTGACAATATCTCAGAATCTTGCCCATCCCCAGGGGGGTGCCTGGAGTTCATCAATCTGGCCAACAACGAGATCACAGGCAGGATCCCGGAGATCAATGGCGAGCGCAGCATCAAGTGGCTGGACTTATCAGGTAATCGTTTGAAGGGCAGCGTTCCAACTTCGATCTCCATGTTAAAGAAAATTGAGCGCCTGGATTTCTCAAGAAATCGGATCGTCGGCAAGATACCGGGGCCCATGGGCGAGCTGAAGGAGCTGAGATGGTTGGATCTGTCATGGAACGGTTTCAAAGGGAAAATTCCAGGGCAGATGTTGGGTTTGAAGCATTTGAAGTATATGAATCTGAGAAACAATCGTCTCTGTGGCCAGATTCCTCAAGCGAAACCCTTGACTGTTTTCCCGGCTTCTGCTTATGCTCACAATGATTGCCTCTGTGGGTCTCCTCTTCCTCCCTGCAAGAACCAAAAGCTTTGATCATGGCGGCCTTCAAGCAGAAATTAATTAGTGGGTCTCGTACAACGTCTCGTTGCAATTGATATTCATTCTTTTAGAGAAAATTTAAATGATGAATAGTCATTGCTGCTTGCCCGTGAGAGAGCCGAAGCTTTCGCTTTAAGTAGATATGTAGGTCTGGTAATGTTGGTGGCATTTCATACCAGAGCCCTTTCCTCAAAATTGGAACTGCATTTAATAAAAATT

Ace file of the UniGene sp_v1.1_unigene8682

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RGI4_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	serine-threonine protein plant-	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	59%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: Separated hits, possible frame ERROR between 811 and 826,

Fln protein: MVVGFFQKYGASLLLLALSMAAGIASADDESPVATCSAKDKEALLSFKAAITEDTTETLITWTPGTDCCGGGWAGIECDASSGRVTQLVLQNPEETNATMYMRGTVSPSLGNLNSLQILIISGLKQITGPIPGSLSNLPWLTQLYIEKNQVTGSIPGTLGRLSKLQALSFAGNSLSGPIPPEFGLLRSLLQLNLGKNRLTGVLPTALKNIRGLQSLDTNGNILSGPIPAFIGSFSNLTYLDLSDNEFDRxxxxxxISELSAIQDLSLARNRLTGKIPYSLGQMNSLASLSLSENMLVGVIPESISKMSKLWYLNLSKNHLSDPLPSGLAKASALLCLDLSYNNLHLGRIPDWITRKEMTNLHLAGCGVKQCLSTWKPIAMNSLLSSIDLSNNNLTGDISHLLKNMTSLEKVYLYNNSLTSNLSEVSLPDSISVLDLHSNKLYGSIEKLFSDNISESCPSPGGCLEFINLANNEITGRIPEINGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRIVGKIPGPMGELKELRWLDLSWNGFKGKIPGQMLGLKHLKYMNLRNNRLCGQIPQAKPLTVFPASAYAHNDCLCGSPLPPCKNQKL*

Protein Length: 608

Fln nts: GAAAAAGAAAAAATTGCAGAGATTTTTCAGATTTTCTGGGTTTTTCCTACCAACACCAACG_-_ATGGTAGTCGGCTTTTTCCAGAAATATGGAGCAAGTTTGCTGCTGTTGGCTTTATCCATGGCCGCCGGAATTGCCTCTGCAGATGACGAAAGCCCAGTAGCGACCTGCTCTGCAAAAGATAAAGAAGCTCTCCTGAGCTTCAAGGCCGCCATTACCGAAGACACGACGGAAACTCTGATCACCTGGACGCCGGGCACCGATTGCTGCGGGGGAGGCTGGGCCGGAATCGAATGCGATGCGAGCAGCGGGAGGGTCACCCAACTGGTGCTGCAAAACCCGGAAGAAACGAACGCCACAATGTACATGCGCGGAACTGTGTCGCCATCTCTGGGTAATCTCAATTCTCTGCAAATTTTGATCATTAGCGGACTGAAGCAGATAACGGGGCCGATCCCGGGGTCTCTCTCTAACCTACCATGGCTAACGCAGCTGTACATCGAGAAAAATCAGGTCACGGGTTCGATTCCCGGGACGCTCGGGAGACTCTCGAAGCTCCAAGCGCTTTCTTTCGCGGGGAACAGTCTCTCCGGCCCGATTCCCCCAGAGTTCGGCTTGCTCCGGTCTCTACTTCAGCTCAACCTCGGCAAGAACCGTCTGACAGGCGTCCTGCCAACGGCTCTAAAGAATATCCGCGGCTTGCAATCTTTGGATACCAACGGTAATATTCTTTCCGGGCCAATTCCGGCCTTCATCGGCTCGTTTTCCAATCTAACATATCTGGACCTCTCTGACAATGAATTCGACAGGCCxxxxxxxxxxxxxxxCATTTCTGAATTATCCGCCATACAAGACCTATCTCTAGCTCGAAATCGACTAACAGGCAAGATTCCATACTCTCTGGGTCAGATGAATTCTCTTGCTAGCCTTTCTCTCAGTGAAAATATGCTTGTAGGAGTTATTCCTGAATCTATCAGTAAAATGTCCAAGTTATGGTATCTGAATCTTTCAAAAAACCATTTGTCTGATCCCCTTCCCTCTGGCCTAGCCAAAGCCTCTGCTCTACTGTGCCTTGATCTGTCTTACAATAATCTGCATCTGGGTAGGATTCCAGACTGGATAACCAGAAAAGAGATGACAAATCTTCACCTTGCAGGCTGTGGGGTCAAACAATGTCTGAGCACATGGAAACCTATTGCCATGAATTCCTTGCTGAGTTCCATTGATCTTTCTAACAACAATCTTACAGGAGATATAAGTCACCTTCTGAAGAACATGACAAGCCTGGAAAAAGTTTATCTCTACAACAACAGTCTCACCTCCAACCTCTCTGAGGTTTCCCTGCCGGATTCTATCTCAGTTCTTGATCTTCACTCAAATAAATTGTATGGGTCTATAGAGAAACTCTTCAGTGACAATATCTCAGAATCTTGCCCATCCCCAGGGGGGTGCCTGGAGTTCATCAATCTGGCCAACAACGAGATCACAGGCAGGATCCCGGAGATCAATGGCGAGCGCAGCATCAAGTGGCTGGACTTATCAGGTAATCGTTTGAAGGGCAGCGTTCCAACTTCGATCTCCATGTTAAAGAAAATTGAGCGCCTGGATTTCTCAAGAAATCGGATCGTCGGCAAGATACCGGGGCCCATGGGCGAGCTGAAGGAGCTGAGATGGTTGGATCTGTCATGGAACGGTTTCAAAGGGAAAATTCCAGGGCAGATGTTGGGTTTGAAGCATTTGAAGTATATGAATCTGAGAAACAATCGTCTCTGTGGCCAGATTCCTCAAGCGAAACCCTTGACTGTTTTCCCGGCTTCTGCTTATGCTCACAATGATTGCCTCTGTGGGTCTCCTCTTCCTCCCTGCAAGAACCAAAAGCTTTGA___TCATGGCGGCCTTCAAGCAGAAATTAATTAGTGGGTCTCGTACAACGTCTCGTTGCAATTGATATTCATTCTTTTAGAGAAAATTTAAATGATGAATAGTCATTGCTGCTTGCCCGTGAGAGAGCCGAAGCTTTCGCTTTAAGTAGATATGTAGGTCTGGTAATGTTGGTGGCATTTCATACCAGAGCCCTTTCCTCAAAATTGGAACTGCATTTAATAAAAATT

Fln Alignment:

sp_v1.1_unigene8682___PTMVVGF-------FQKYGXXXXXXXXXXXXXXXXXDDESPVATCSAKDKEALLSFKAAXXXXXXXXXXXXXPGTDCCGGGWAGIECDASSGRVTQLVLQNPEETNATMYMRGTVSPSLGNLNSLQILIISGLKQITGPIPGSLSNLPWLTQLYIEKNQVTGSIPGTLGRLSKLQALSFAGNSLSGPIPPEFGXXXXXXXXXXGKNRLTGVLPTALKNIRGLQSLDTNGNILSGPIPAFIGSFSNLTYLDLSDNEFDRPxxxxxISELSAIQDLSLARNRLTGKIPYSLGQMNSLASLSLSENMLVGVIPESISKMSKLWYLNLSKNHLSDPLPSGLAKASALLCLDLSYNNLHLGRIPDWITRKEMTNLHLAGCGVKQCLSTWKPIAMXXXXXXXXXXXXXXTGDISHLLKNMTSLEKVYLYNNSLTSNLSEVSLPDSISVLDLHSNKLYGSIEKLFSDNISESCPSPGGCLEFINLANNEITGRIPEINGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRIVGKIPGPMGELKELRWLDLSWNGFKGKIPGQMLGLKHLKYMNLRNNRLCGQIPQAKPLTVFPASAYAHNDCLCGSPLPPC
B8LS28______________PSMAVGLPGVICICFQKHGAILLLLVLSLAAVITSGDDENPGATCFLKDKEALLSFKAAIPEDTTGTLITWTPGTDCCGGGWAGIQCDARSGRVTQLVLQNPEETNDTMYMRGTVSPSLGNLKSLQILIISGLKHITGTIPGSLSDLSWLTQLYIENNRVTGPVPRVLGSLSRLQALSFTGNSLSGPIPLELGELQSLIQLNLGKNRLTGVLPTTLKNIRGLQSLDINGNILSGPIPAFLGSFVNLTYLDLSGNEFTGPxxxxxIADLSSIQDLSLSRNRLTGEIPYSLGRMNSLSSLSLSENMLVGVIPESISKMSNLWNLNLSKNHLSDPLPSGLAKASALVRLDLSYNNLHLGRIPDWITKKEMTNLHLAGCGVRQCLSTWKPRAMNSLLSSIDLSNNNLTGDISQLLKNMTSLQRVYLSNNSLTTNLSEVSLPDSISVLDLHSNKLYGSIEKLFYDNISESCPSPGGCLEFINLANNEITGRIPEIDGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRMVGKIPGAMGELKELRWLDLSWNGLKGRIPGQILGLKHLKHMNLRNNRLCGEIPQGKPLNVFPASAYAHNDCLCGSPLPRC

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
741		40	60		1.0
849	75			25	0.996473
851	75	25			0.996473
852		75	25		0.996473
853	75	25			0.996473
857		75		25	0.996473
858		75	25		0.996473
859	25			75	0.996473
860	75		25		0.996473
862		75	25		0.996473
863	25			75	0.996473
868		75	25		0.996473
869		25		75	0.996473
938	14	85			0.993533
1541		90		10	0.90298
1556	10			90	0.90298
1558			10	90	0.90298
1560	90		10		0.90298
1877		71		28	1.0
1896		71		28	1.0
2004	14	85			0.993533
2012	85		14		0.993533
2014		85		14	0.993533
2015		85		14	0.993533
2018	85	14			0.993533
2019	14		85		0.993533
2028	14	14		71	0.984337
2029		14		85	0.993533
2056		16		83	0.994512
2060	16		83		0.994512
2082		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain