SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8675

Length: 706 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8675

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosome recycling factor, putative; K02838 ribosome recycling factor	-	-	6.0e-23	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	ribosome recycling	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	88%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	88%
Blast2go	copper ion binding	GO:0005507	Molecular Function	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosome recycling factor	IPR002661	-	88%
Blast2go	Arginine repressor, C-terminal	IPR020899	-	88%
Blast2go	Ribosome recycling factor domain	IPR023584	-	88%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
210		40		60	1.0
252		60		40	1.0
389		50		50	1.0
456	90			10	0.90298
457		10	90		0.90298
461	90			10	0.90298
462		10	90		0.90298
463	10		90		0.90298
528	10		90		0.90298
561	90		10		0.90298
586		90	10		0.90298
587	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain