SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8652

Length: 1042 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8652 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polyribonucleotide nucleotidyltransferase, putative (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	polyribonucleotide nucleotidyltransferase	-	-	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	Polyribonucleotide nucleotidyltransferase.	EC:2.7.7.8	-	0.0	59%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Purine metabolism	00230		0.0	59%
AutoFact	Pyrimidine metabolism	00240		0.0	59%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S1, RNA-binding domain	IPR003029	-	71%
Blast2go	K Homology domain	IPR004087	-	71%
Blast2go	K Homology domain, type 1	IPR004088	-	71%
Blast2go	Polyribonucleotide nucleotidyltransferase	IPR012162	-	71%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	71%
Blast2go	Exoribonuclease, phosphorolytic domain 2	IPR015847	-	71%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	71%
Blast2go	K Homology, type 1, subgroup	IPR018111	-	71%
Blast2go	RNA-binding domain, S1	IPR022967	-	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYG1

Fln msg: STOP codon was not found. Distance to subject end: 35 aas, your sequence is shorter than subject: 347 - 425

Fln protein: RRDLGCHSLLRGVGCYRILTDILGLEDHLGDMDFKIAGTRKGVTSIQLDIKPAGIPLDILCQCLDPAFEARKQILDFMEREINNPREKAKQSSPRLVTLSINRDYLSRLIGPQGSHLKKIEQETGSRISVNFDGTVTILAKDQTSLEETQEKVEFIAGREIEVGGIYKGVIVAIKDFGAFVDFGAGKEGLLHISEMSHDPVVRVSDVVSVGQKVSLMCIGRDLRGNVKVSLKAMLSKKDVEPKKFSAGGSAMLSKKDVEPKKFSVEGSAITFVERSLSTSNPAGCNVSVIDSTTNSVSVSSNTCLENQASDSSSQQTDVNSLYSSEVVLIRSAEECDAKRVSEGTTQ

Protein Length: 348

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCTTCGTGGCGTTGGCTGTTATCGGATTTTAACTGATATACTAGGTCTGGAAGATCATTTGGGGGATATGGACTTCAAGATTGCTGGGACAAGGAAAGGGGTGACATCTATACAGTTGGACATTAAACCGGCTGGTATACCTCTTGATATTCTTTGTCAGTGTCTTGATCCTGCCTTTGAAGCTCGTAAGCAGATTTTAGATTTTATGGAACGAGAGATCAACAATCCAAGGGAAAAGGCTAAACAAAGCTCTCCACGCTTAGTCACTCTTAGCATAAATCGGGACTATCTCTCACGATTAATAGGACCTCAAGGATCACATCTCAAGAAGATTGAACAGGAAACTGGCTCACGGATTTCAGTGAATTTTGATGGGACTGTTACCATATTAGCTAAAGACCAGACTTCTTTGGAAGAGACCCAGGAAAAGGTTGAATTTATTGCTGGACGTGAAATAGAAGTTGGTGGCATATACAAAGGTGTCATAGTAGCCATTAAGGATTTTGGGGCTTTTGTTGATTTTGGTGCGGGCAAAGAAGGCCTTCTTCATATATCTGAAATGTCACATGATCCGGTGGTTCGAGTTTCTGATGTTGTATCAGTTGGACAGAAAGTCTCACTGATGTGCATTGGAAGAGATCTCAGGGGCAATGTAAAGGTCTCGCTGAAAGCTATGTTATCAAAAAAAGATGTAGAACCTAAGAAGTTTTCAGCAGGAGGATCTGCTATGTTATCAAAAAAAGATGTAGAACCTAAGAAGTTTTCAGTAGAAGGATCTGCTATAACATTCGTTGAGAGATCTTTGTCTACTTCAAATCCAGCAGGGTGCAATGTGTCTGTCATTGATTCTACTACCAATTCTGTATCAGTTAGCAGTAATACCTGTTTAGAAAATCAAGCCTCAGACAGTAGCAGCCAGCAGACAGATGTTAATTCTCTATATTCATCTGAAGTAGTCTTAATTCGAAGTGCTGAGGAATGTGATGCAAAAAGAGTGTCTGAAGGTACTACACAAA

Fln Alignment:

sp_v1.1_unigene8652___KDQTSLEETQEKVEFIAGREIEVGGIYKGVIVAIKDFGAFVDFGAGKEGLLHISEMSHDPXXXXXXXXXXXXXXSLMCIGRDL-RGNVKVSLKAM
A9NYG1______________EEQTRLVLSNRKAMADSQAQLGIGSVVLGTVQTIKPYGAFVDLG-GINGLLHVSQISHDRVADVGTILQPGDTLKVMILSHDRERGRVSLSTKKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
566		14		85	0.993533
1000		50		50	1.0
1005	50		50		1.0
1009	50			50	1.0
1010			50	50	1.0
1011		50		50	1.0
1014	50	50			1.0
1015		50	50		1.0
1016			50	50	1.0
1017		50		50	1.0
1019	50	50			1.0
1023	50			50	1.0
1024	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain