SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8644

Length: 1915 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8644

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PDTp; arogenate/prephenate dehydratase (EC:4.2.1.91)	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	pdr1	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prephenate dehydratase	IPR001086	-	0.0	71%
Blast2go	Prephenate dehydratase, conserved site	IPR018528	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR98

Fln msg:

Fln protein: MALRYSYISARPEGRKAPLDVKNEGFCSFRRSFCVFGQLGDGQAKGAARRSVKSNRVKSPFKPIPVEDLGSYVGQSERTVLDQLERIYRQGMLTSNGDSNDVLLPMEPLWTGPLFEGKPVKVAYQGVRGSYCQEAAIRAFQRCDALPCEGEMESAFEALESDAADRAVLPVENSLDGVIGRNYDLMLRHPDLHVVGEVLLRINHCLLAVRGAEKRRTLKRVISHPQALAHCQRCLGALGVEVEAVDNAASAARFVAENRIDDTAVIGSAVAGREYGLEVVEEEMQDDSSNATRFLILTKKNPNNNSSAVSGLKTTVAFSLKEGTTDLCKALSIFAARDIKVTKIESRPQRENPLRMVRNEEQERKSSKCYFEYVFFVDLEAPVADDHPGRVQMALDSLRQIAGFVRVIGNYSVLSVLS*

Protein Length: 420

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAGAGGTCCTTGCCGATCTCTGCCTCTCTCATCTTTCCTGCTCTCTTTACTTTCTTTGATTCCCTGTGTCTGAGGGTTGGATTCATCAGAGCCTTAAACAAGAGATCCAATAGAACCACCGGCCTTGAAACCAGAGCGATTGTTAGGTCTTCATATATAGATTCCTTTTGTGTTTGACTCC_-_ATGGCTTTGAGATATTCATATATCTCTGCCCGGCCGGAGGGGAGGAAGGCGCCCTTGGATGTAAAGAATGAGGGTTTCTGTTCTTTCCGTAGATCCTTCTGCGTCTTCGGGCAGTTGGGTGATGGCCAAGCAAAGGGAGCCGCCCGCCGTTCGGTGAAGTCGAATCGAGTGAAAAGCCCTTTTAAACCTATACCGGTTGAAGATCTTGGATCTTATGTAGGGCAGTCGGAGAGGACGGTACTAGATCAGCTTGAACGAATTTATAGGCAGGGAATGTTGACCTCTAATGGCGATAGTAACGATGTGTTGCTTCCCATGGAGCCCCTGTGGACAGGGCCGTTGTTTGAGGGGAAGCCGGTGAAAGTGGCGTATCAGGGCGTGCGCGGCTCCTATTGCCAAGAGGCGGCGATTCGAGCCTTCCAGAGGTGCGATGCGCTCCCCTGCGAAGGGGAAATGGAATCTGCTTTCGAGGCACTGGAATCGGACGCCGCTGATCGGGCAGTCCTGCCTGTGGAGAACTCGCTGGACGGAGTCATTGGGAGGAACTACGATTTGATGCTACGCCATCCCGATCTCCATGTCGTGGGCGAGGTACTGTTGCGCATAAATCATTGCCTGCTTGCAGTGAGAGGGGCGGAGAAGAGGCGTACTTTGAAGAGAGTGATTAGCCATCCGCAGGCCCTGGCTCATTGCCAGCGGTGTCTCGGGGCTCTTGGCGTGGAGGTGGAGGCCGTGGACAACGCTGCGAGCGCGGCTCGTTTCGTAGCGGAGAACCGCATAGACGACACGGCCGTCATCGGCAGTGCGGTTGCCGGGCGGGAATACGGTCTTGAAGTGGTGGAAGAAGAAATGCAGGACGATTCCTCCAACGCCACCAGATTTCTCATTCTCACCAAAAAGAACCCTAACAACAATTCCTCTGCAGTATCAGGGTTAAAGACGACAGTGGCTTTCTCGCTGAAAGAGGGAACGACCGATCTGTGCAAGGCGTTGTCAATATTCGCTGCAAGAGACATAAAAGTGACAAAGATCGAATCCCGCCCTCAGCGCGAGAACCCCCTGCGTATGGTAAGAAACGAAGAGCAAGAAAGGAAAAGTTCCAAGTGTTATTTCGAGTACGTTTTCTTCGTTGATTTGGAGGCACCAGTAGCTGATGATCATCCAGGCCGGGTGCAAATGGCTCTGGACTCTCTGCGACAGATCGCGGGATTTGTGAGAGTCATCGGAAACTATTCTGTCCTCTCCGTCCTTTCGTAA___AACAACAAACAGATTGTTTCTCTCCGTTCTTGTGACAGATCGACATTTGTAAACTCGATACCTTGTACAGGGATTTGAGCATTAAATTATCAAGAATTACAAAATTTGTACAGGGATTTGAGGATTAAATTATCAAGAACTACAAAATTTGTACAGGGATTTGAGGATCAAATTATCAATAATACAAAATTCGTACAGGGATTTGAGGATTAAATTAAAGCTGTACTATTTGCCAAGAGAAACCATGTACTGAACCGTCTACAGTCTTCAATCGAAATACTGAAACTAAAGTTTCGTCAAGAATAAAATAATAGTAATTGAAGGGGATGCAGGCCGGCTCATCCTTGATGTTATTCTCCGCGTGGCCATTCAAACGGAATTGTCGCGAGCGATAAGTATGTACCCCAAGCTTTAATCCAACAGATTTATATTTTATCGGAGGGTTTCAACC

Fln Alignment:

sp_v1.1_unigene8644___SMALRYSYISARPEGRKAPLDVKNEGFCSFRRSFCVFGQLGDGQAKGAARRSVKSNRVKSPFKPIPVE---DLGSYVGQSERTVLDQLERIYRQGMLTSNGDSNDVLLPMEPLWTGPLFEGKPVKVAYQGVRGSYCQEAAIRAFQRCDALPCEGEMESAFEALESDAADRAVLPVENSLDGVIGRNYDLMLRHPDLHVVGEVLLRINHCLLAVRGAEKRR-TLKRVISHPQALAHCQRCLGALGVEVEAVDNAASAARFVAENRIDDTAVIGSAVAGREYGLEVVEEEMQDDSSNATRFLILTK-KNPNNNSSAVSGLKTTVAFSLKEGTTDLCKALSIFAARDIKVTKIESRPQRENPLRMVRNEEQERKSSKCYFEYVFFVDLEAPVADDHPGRVQMALDSLRQIAGFVRVIGNYSVLSVLS
B8LR98______________AMAFRCAYL---PTWETQLLSSPDDGSCR-RTKFAVTNALWTTR---------KTKPVFDPLKLPTVQRSGDLGT-------ALLDRLERIYKEGM----PGNNDGLLPMEPLWAGPLFQGKPMRVAYQGVRGSYCQEAAVRAFQRCDALPCEGGMDSAFEALESNDADRAVVPVENSLDGVIERNYDLMLRHPDLHVVGELLLPINHCLLAVRGAGKRSPAVKTVVSHPQALAHCQQRLVALGVQVEAVDNAARAARFVAENRLDDTAVIGSEIAGREYGLQVLEEEIQDDSSNTTRFLILSKPNNKNNNSSALPGSKTTVAFSLKEGTADLFKALSIFAVRDIEVTKIESRPQRKNPLRLVMNEEQDGGSSKCYFEYVFFVDLEVPATDDNPSSVKRALDQLRQISSFVRIVGSYSTISIVS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
375	75	25			0.996473
404		33		66	0.997452
466	83			16	0.994512
507		80		20	0.995493
899			87	12	0.992554
1015	11		88		0.923564
1022			87	12	0.992554
1897	25			75	0.996473
1901	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain