SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8633

Length: 1047 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8633

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	flavin reductase-related	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	3-beta hydroxysteroid dehydrogenase isomerase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	83%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWJ7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 256 - 285

Fln protein: LVHSSPP*GCKM*HGEPDEQRTTKTVFVAGATGNTGKRIVTQLLSKGFNVRAGVRDVDSAKNNFPSNDTKLQIVKADVTEGAAKLSEAIGNAEAVICATGFRPSLDFLAPWKVDNFGTVNLVDACRSIAVNRFILISSILVNGAAIGQLLNPAYIVLNVFGLTLVAKLQAEQYIRKSGIDFTIVRPGGLRNDPPSGNIVMEAEDTLFEGSISRDQVAEVAVEALVYPEASYKVVEIVSRENTPKKSLQELFASVK*

Protein Length: 257

Fln nts: CCCTTGTCCATTCGTCTCCTCCTTGAGGCTGCAAAATGTGACATGGGGAACCAGATGAGCAGAGGACGACTAAAACAGTATTTGTTGCAGGTGCCACAGGAAACACAGGCAAACGGATTGTAACACAGCTCTTATCCAAAGGATTCAATGTCAGGGCTGGTGTCCGCGATGTGGACAGCGCCAAGAACAATTTCCCCTCTAATGACACCAAACTTCAAATTGTCAAGGCAGATGTGACAGAGGGTGCTGCTAAACTGAGTGAAGCAATAGGCAATGCTGAAGCTGTCATCTGTGCAACGGGGTTCCGCCCTTCTTTAGATTTTCTGGCGCCATGGAAGGTCGATAACTTTGGTACCGTGAATCTAGTTGATGCATGCCGGAGTATTGCTGTGAACAGATTCATTCTTATTAGTTCCATCCTAGTCAATGGTGCAGCAATTGGACAGTTACTTAATCCTGCTTATATTGTCCTCAATGTCTTTGGCTTGACACTAGTTGCAAAACTACAAGCAGAGCAGTATATTAGAAAGTCTGGTATTGATTTCACCATTGTTCGACCAGGAGGGCTGAGAAACGACCCTCCAAGTGGCAACATAGTCATGGAGGCTGAGGACACTCTTTTCGAAGGCTCTATATCACGAGACCAGGTTGCTGAAGTTGCTGTAGAAGCTCTAGTATATCCAGAGGCCTCATATAAAGTTGTGGAGATAGTCTCTCGAGAAAATACTCCAAAAAAATCTCTTCAAGAACTGTTTGCCTCAGTCAAATAA___GGTCAGCTGGTTTGGGATTAGGATATAGGATTCAATAAGATTATTTGATGTACATGACCTTGTTAACGCTGATTGTTGCATAGCACTCCAGTCTGGCAGTTACACACAAGGAGTTGCAGTGCATTGCTTCTAATGATTTGTCTGTGATAAAATAACTTTCCTCTCTGGAAACGGGATTTATTCTGTCTGATTCATGATTGATTTTCATCATGCCTTGTTGCTGATTTGTTGTTATGTCCTTATATGTTTGCTACATATCCTGTTTGATCTGCAATCC

Fln Alignment:

sp_v1.1_unigene8633___GEPDEQRTTKTVFVAGATGNTGKRIVTQLLSKGFNVRAGVRDVDSAKNNFPSNDTKLQIVKADVTEGAAKLSEAIGNAEAVICATGFRPSLDFLAPWKVDNFGTVNLVDACRSIAVNRFILISSILVNGAAIGQLLNPAYIVLNVFGLTLVAKLQAEQYIRKSGIDFTIVRPGGLRNDPPSGNIVMEAEDTLFEGSISRDQVAEVAVEALVYPEASYKVVEIVSRENTPKKSLQELFASVK
A9NWJ7______________GEPNEQRTTKTVFVAGATGNTGKRIVTQLLSKGFNVKAGVRDVDSAKNNFPT-DTNIQFVKADVTEGAAKLSEAIGDAEAVICATGFRPSLDFLAPWKVDNFGTVNLVDACRSIGVNKLILISSILVNGAAIGQLFNPAYIVLNVFGLTLVAKLQAEQYIRKSGIDFTIVRPGGLRNDPPSGNIVMQAEDTLFEGSISRDQVAEVAVEALLYPEASYKVVEIVSRENAPKKSLQELFASIK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
184	77		22		0.999999
207	75		25		1.0
450		66		33	0.997452
458			66	33	0.997452
498	16		83		0.994512
503	16		83		0.994512
557	83		16		0.994512
592	80		20		0.999996
610	90		10		0.90298
719	83		16		0.994512
824	66		33		1.0
870		25		75	1.0
926		85		14	0.993533
930	28	71			1.0
962			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain