SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8627

Length: 1186 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8627

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartyl aminopeptidase, putative (EC:3.4.11.21); K01267 aspartyl aminopeptidase [EC:3.4.11.21]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aspartyl aminopeptidase.	EC:3.4.11.21	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	vacuole	GO:0005773	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN23

Fln msg: your sequence is shorter than subject: 229 - 502

Fln protein: ARNEFVYSGRLDNLASSFCALRALLDTCSHSADLSNASCIRMVALFDNEEVGSNSAQGAGAPTMFQAMKRITKCLTHRFPEEGVFERAIQKSFLVSADMAHGVHPNYSEKYEDHHQPKLQKGIVIKHNANQRYATNTVTSFLFKEVANINHLPTQDFVVRNDMGCGSTIGPILAAGVGIRTVDCGIPQLSMHSVREMCGVEDVNIAYKHFKAFYQTFSAVDDKLSVDS*

Protein Length: 230

Fln nts: GCACGGAATGAATTTGTTTATTCTGGAAGACTGGATAATCTTGCTTCAAGTTTTTGTGCATTAAGAGCTCTTTTGGACACATGTAGTCACTCAGCAGATCTATCAAATGCATCCTGCATAAGGATGGTGGCCTTATTTGATAATGAAGAGGTAGGGTCAAATTCAGCACAAGGAGCGGGTGCACCTACCATGTTTCAAGCGATGAAAAGGATTACAAAATGCTTGACTCATAGATTTCCAGAGGAGGGTGTATTTGAACGTGCAATCCAAAAGTCTTTTCTTGTGTCTGCAGATATGGCACATGGGGTGCATCCAAATTATTCAGAGAAATATGAAGATCATCATCAACCGAAATTGCAGAAAGGCATTGTGATCAAACACAATGCCAATCAACGCTATGCAACAAATACTGTGACATCATTTCTTTTTAAAGAAGTTGCAAATATAAATCATCTTCCTACTCAGGACTTTGTCGTCAGGAATGACATGGGGTGTGGCTCTACAATTGGTCCTATATTGGCAGCAGGAGTTGGTATTCGCACTGTGGATTGTGGCATTCCCCAACTTTCCATGCATAGCGTGCGGGAGATGTGTGGCGTAGAAGACGTCAACATTGCATACAAGCATTTTAAGGCATTCTATCAAACTTTTTCTGCTGTAGACGACAAGTTGTCCGTTGACAGTTGA___TTGCTTTCATGTATATCATGACTGTTGACAACTGTTGTCAGAGTATTCTTGCACACATGTTTTCATTTCTTACATTTTTTGCAGCTAAGTCGCTCTGTTGCAACCACACTAAAATGTTTGGTTGGCCTTCATGAATGTTCAATAGTATGAAAATTTGTAAACAACTCCCATTGAGTATCATTGCTTTAAAGCATGGAATTTGATTCCGTTGAGGCTTATTATTTTGAACATTCATAATTTCTAGGAAACTGAATATAATCATTTGGGGCATTAGGATATTAAAGTATTCGCTGAAGATCCGGGAGAACCATTAATTGTCGAATGCAATATGAAATCTTTCAGCGGTGCACTTATTCTTTTTATCTTGAAACCAAACTTTTACTTACTAGTTCTGGACAATTTGCATGACCATGTACAAAGCAAATGAACATATTCTTGCTTGTATTTATAGCTGGCAATTATAGAATTTATAGATAATTGATGAAGAAGAGCATCCATG

Fln Alignment:

sp_v1.1_unigene8627___EFVYSGRLDNLASSFCALRALLDTCSHSADLSNASCIRMVALFDNEEVGSNSAQGAGAPTMFQAMKRITKCLTHRFPEEGVFERAIQKSFLVSADMAHGVHPNYSEKYEDHHQPKLQKGIVIKHNANQRYATNTVTSFLFKEVANINHLPTQDFVVRNDMGCGSTIGPILAAGVGIRTVDCGIPQLSMHSVREMCGVEDVNIAYKHFKAFYQTFS
B8LN23______________EFIFSGRLDNLCMSFCALKALVDATTSEESLQDEPGVRMIALFDHEEVGSASAQGAGSPVMFDALARVTSSLSAS-DSKVPLEKAIQKSFLVSADMAHSLHPNYMDKHEQNHQPQMHKGLVIKFNANQRYATNAVTSFIFREIGKKNKLPTQEFVVRNDMPCGSTVGPILASGVGIRTVDVGAPQLSMHSIREMCGVDDVVYSHLHFKAFFEDYA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
579			20	80	0.995493
580	80		20		0.995493
754		66	33		0.997452
834	75	25			0.996473
838	75		25		0.996473
843	75	25			0.996473
844	75	25			0.996473
847			25	75	0.996473
849		25		75	0.996473
850	75			25	0.996473
851	75		25		0.996473
852	75			25	0.996473
854	66		16		0.988813
855	83			16	0.994512
858		83	16		0.994512
859	33	66			1.0
861	83	16			0.994512
865	83		16		0.994512
866		16	83		0.994512
868	83		16		0.994512
873	16			83	0.994512
1003	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain