SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8618

Length: 1315 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8618

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative spermine synthase (Fragment) n=2 Tax=Cupressaceae RepID=Q76JP8_CRYJA	-	-	74%
FL-Next	Isoform 2 of Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5	-	-	61%
Blast2go	spermine synthase	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Spermine synthase	IPR001045	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9S7X6-2

Fln msg:

Fln protein: MRMGEVAVKANDNFVNGNGIHEISGSNGTVTSVPLLGEGRRRCCWYEEEVDDDIRLCFALNSILHTGVSHYQEIALLDTKPFGKVLVIDGKLQSAEMDEFIYHESLVHPALVHHSNPKTVFIMGGGEGSTAREILRHRSVNKVVMCDIDEEVVDFCKKHLVVNQEAFSSPRLDLIINDARAELENRDQCFDVIIGDLADPIEGGPCYQLYTKSFYELVVKPKLSHGGIFVTQAGPAGALSHTEVFSCIYNTLRHVFKFVVPYSAHVPSFADTWGWVMASDQPFTSNTREIDSRTKQRIEGDLRYFDGETFVAASTLNKSVRKTLANETHVYTAETARYIYGHGTGHKPRI*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCCACCTGATCCTTAACCATTTCCTCATCTCCCTCCTTTTGTTTGGTCGCGGACTTCGCAAGCATTCCATTAACTGCCTAGCAGCACTAGCTTTGCAAGTCAATATCGTGGCAGAGACCAATTTT_-_ATGAGAATGGGGGAAGTCGCGGTGAAGGCAAATGACAATTTTGTGAACGGGAACGGTATCCATGAAATAAGCGGTAGCAATGGAACAGTAACGTCGGTACCCCTGCTCGGTGAAGGACGGCGGCGATGCTGCTGGTACGAAGAAGAAGTTGACGACGATATTCGTTTGTGCTTCGCCTTGAATAGCATTTTGCATACTGGAGTTAGTCATTATCAGGAGATAGCACTCCTCGATACCAAACCTTTCGGAAAGGTTCTTGTTATCGATGGCAAGTTACAGAGCGCAGAAATGGACGAGTTTATTTATCATGAATCTTTGGTGCATCCCGCTCTGGTTCACCACTCCAATCCTAAGACCGTTTTCATAATGGGAGGCGGTGAGGGATCGACTGCCAGGGAAATACTGAGGCACAGGAGCGTAAATAAAGTCGTTATGTGTGACATTGACGAGGAAGTTGTGGACTTCTGCAAGAAACATCTGGTGGTAAATCAAGAAGCATTCTCCAGTCCGCGGCTTGATCTGATCATCAATGACGCAAGAGCCGAACTGGAAAACAGGGACCAGTGTTTTGACGTCATTATTGGAGACCTTGCGGATCCTATAGAAGGCGGTCCCTGCTATCAGCTTTACACTAAATCTTTCTATGAATTAGTCGTCAAGCCAAAACTAAGTCACGGAGGCATTTTTGTGACGCAGGCCGGACCTGCTGGTGCTCTAAGTCACACAGAGGTATTTTCTTGCATATACAACACATTAAGACATGTCTTCAAATTTGTGGTTCCATACTCTGCCCACGTACCTTCTTTCGCTGACACCTGGGGATGGGTGATGGCATCAGATCAACCATTTACCTCAAATACTAGAGAAATAGACAGCAGAACTAAGCAGCGCATCGAAGGCGATCTGCGGTACTTCGATGGAGAAACGTTTGTTGCAGCGTCAACTTTGAACAAGAGTGTTCGCAAGACGTTGGCAAATGAAACGCATGTGTATACTGCAGAGACGGCGAGATATATCTATGGGCATGGCACGGGTCACAAGCCCCGCATCTAA___GCTTGTGCATCTGTAGAACCAGTTTTGTCAATATCTGTTTAGGCACTTGAGGAGATTCGAACTTCTGACATAGATCATGATCTCTTTGAGCGGAGAGACCCGTTTAGAA

Fln Alignment:

sp_v1.1_unigene8618___GNGIHEISGSNGTVTSVPLLGEGRRRCCWYEEEVDDDIRLCFALNSILHTGVSHYQEIALLDTKPFGKVLVIDGKLQSAEMDEFIYHESLVHPALVHHSNPKTVFIMGGGEGSTAREILRHRSVNKVVMCDIDEEVVDFCKKHLVVNQEAFSSPRLDLIINDARAELENRDQCFDVIIGDLADPIEGGPCYQLYTKSFYELVVKPKLSHGGIFVTQAGPAGALSHTEVFSCIYNTLRHVFKFVVPYSAHVPSFADTWGWVMASDQPFTSNTREIDSRTKQRIEGDLRYFDGETFVAASTLNKSVRKTLANETHVYTAETARYIYGHGTGHK
Q9S7X6-2____________GNGFPEIHKATSPTQT---LHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIALLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREILKHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVGDLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQVFKYVKAYTAHVPSFADTWGWVMASDHEFDVEVDEMDRRIEERVNGELMYLNAPSFVSAATLNKTISLALEKETEVYSEENARFIHGHGVAYR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
779		80	20		0.995493
780	80		20		0.995493
797	16			83	0.994512
799		83	16		0.994512
800			16	83	0.994512
801	83		16		0.994512
903	85		14		0.993533
904		85	14		0.993533
1031	75		25		0.996473
1110	85		14		0.993533
1112	85		14		0.993533
1213		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain