SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8602

Length: 2230 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8602
CGTCGTGACCTTGGCTGTCACTCAGGTAATTCAAAACAGGGTATTGTAATACCACTAGATGAAATTCAAAGCAATATCTGAATACTACCAGATAAGACAAATTTGGAGGGAAAGGCTTTATGAAACGGGTAAAATCCGCCAAATATGGAACTCCGAACGTTCCTGCAATATCTTGCAAACTATAAATAGCATAGCCGTTTCTGCCCGAAGCAGCCCGTGATGTTCACTCATAATTAGCTGGGCGATCTTGAGGTGGGGCTGGGTTTTTGGTTCCCGGGATTCGAACGCGGATTAGACGAACACTCGACAAGATGAACAACCAGGGACAGAATACGGCAGGAGCTCAAAGCAGGAGGCAGAGCCTGACTCAAAGAAAAGGGTCGGCAACTTCAGTGAAGAAGCAGGTTCCTTCTGAGAACGGTAGCACTGGGAATGGTAGCATTGGATCTTTCAGGAAATCGGCGACGCCGCTTTCACCACCAACCTCGGGGGAGAGGACCGTGAAGAGGCTGAGATTGTCCAAGGCGCTCACTATTCCAGAGGGCACGTCGGTGTACGATGCTTGCCGTCGTATGGCCATGCGCAGGGTCGACGCTGCTCTGCTCACGGATCACAGCGCCTTACTCTCTGGAATCATAACCGACAAGGATGTGGCAACGAGGGTTATAGCTGAGGGTTTGAAGCCTCGCGACACACCGGTTTCAAAGGTCATGACGCGGAATCCAATCTTTGTCATGGCGGAGTCTTCGGCCGTAGAAGCCCTCGAGAAGATGATTGATGGGAAGTTTAGACACTTGCCGGTTGTGGAAAATAGCGAGGTCATTGCTCTGCTTGATATTACGAAGTGCCTCTATGACGCAATAGCAAAGATGGAAAAGGTCGCGGAAAAGGGCAGTGCTATTGCTGCTGCCGTCGAAGGCATCGAAAGACAATTTGGAGACGCTCCCAGTTCTTTTATTGAAACACTACGGGAACAAATATTCAGGCCCACTTTATCAACAGTCATCGCGGAAAATACAAAGGTGGCAACAGTTTCACCGTCTGAATCTGTGTATATGGCCGCAAAGAAGATGCGTGAATTTCGAGTCAATTCAGTCATCGTCACAACTGGGAATAAGCCTCAAGGAATTCTAACTTCAAAGGATTTGCTTACACGGATTGTTGCACACAACCTTTATCCAGAATCAACCCTCGTTGAAAAGGTGATGACACCAAGTCCAGACTGTACAACTGTTGACACAACAATTGTTGATGCATTGCACACCATGCACGATGGGAAATTTTTACATCTTCCAGTTGTTGATAAAGATGGATACATTTTGGCCTGTCTGGATGTTTTACAGCTAACACATGCAGCCATGGCCATGGTGGGAGGTTCAAGCTGTGCTGCAAGTGACACAGCAAGCACAATGATGCAGAAATTCTGGGATTCGACTCTGACATTAGAGCCACAGGAGATTGATGAGGATGGTCACAGTGATTTCTCTCCAAGGCAGTCAGTTGATGGTATAGAATCAGTAAAATCAGGATATCCATTGTTAGGTCTTGCGAATACATTTGATTTTAAGTTGCGCGATTCTAAGGGTCGCATTCATCGTTTCAACTGTGGATTTGAGAGCTTGACAGAGCTTGCTTCTGCTGTTGTTCAACGAATAGGAGATGATATTGATCAACTCCGGCCACCTCAGATTTTGTATGAAGATGATGAAGGTGATAAGGTCTTACTCTCCACTGATGGTGACCTTGTTGCAGCTGTAAATCATGCCAGGCAAGCAGGTTTGAAGGGACTGAAATTGCATGTTGATAGCTCGGTTCCAGAGGATAAGAAGACAGTTACGTCTACAGATTCTGTTGAGTTCGATCTTGCACGAAGGCATGACCGGTCTTCATCATACAGGACAGTTGTTGTAGGAGTGGCTTTGTTGGCAGGTGTTAGTATCTTGGTATATTTGAAAAGATCATCAAAGTAAAAGAACTAAACACGCTTGGCTTACAGGATCTCAAGGAAGGTAGATGCTTTGGTTTACAGTGATCAATTTAATATTGACACTTTAAAGTATATCAAGGAAAGTGGATGCCTTGGTTTACAGTGACCACTTAATTATTTCTAGATTTTAGTTAAGGAAATAGTAGATCTGTTTCAGGGTTCAACCAGATGTGGATTAAGCTATCTCGTTTAAATTTTAGTAAAAACCTACAAGGCAGCCTTTGATCGTAGTGTACTTGAGAT

Ace file of the UniGene sp_v1.1_unigene8602

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	Identity
Blast2go	Phox/Bem1p	IPR000270	-	75%
Blast2go	Cystathionine beta-synthase, core	IPR000644	-	75%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPZ1

Fln msg: your sequence is longer than subject: 553 - 205

Fln protein: MNNQGQNTAGAQSRRQSLTQRKGSATSVKKQVPSENGSTGNGSIGSFRKSATPLSPPTSGERTVKRLRLSKALTIPEGTSVYDACRRMAMRRVDAALLTDHSALLSGIITDKDVATRVIAEGLKPRDTPVSKVMTRNPIFVMAESSAVEALEKMIDGKFRHLPVVENSEVIALLDITKCLYDAIAKMEKVAEKGSAIAAAVEGIERQFGDAPSSFIETLREQIFRPTLSTVIAENTKVATVSPSESVYMAAKKMREFRVNSVIVTTGNKPQGILTSKDLLTRIVAHNLYPESTLVEKVMTPSPDCTTVDTTIVDALHTMHDGKFLHLPVVDKDGYILACLDVLQLTHAAMAMVGGSSCAASDTASTMMQKFWDSTLTLEPQEIDEDGHSDFSPRQSVDGIESVKSGYPLLGLANTFDFKLRDSKGRIHRFNCGFESLTELASAVVQRIGDDIDQLRPPQILYEDDEGDKVLLSTDGDLVAAVNHARQAGLKGLKLHVDSSVPEDKKTVTSTDSVEFDLARRHDRSSSYRTVVVGVALLAGVSILVYLKRSSK*

Protein Length: 554

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTAATTCAAAACAGGGTATTGTAATACCACTAGATGAAATTCAAAGCAATATCTGAATACTACCAGATAAGACAAATTTGGAGGGAAAGGCTTTATGAAACGGGTAAAATCCGCCAAATATGGAACTCCGAACGTTCCTGCAATATCTTGCAAACTATAAATAGCATAGCCGTTTCTGCCCGAAGCAGCCCGTGATGTTCACTCATAATTAGCTGGGCGATCTTGAGGTGGGGCTGGGTTTTTGGTTCCCGGGATTCGAACGCGGATTAGACGAACACTCGACAAG_-_ATGAACAACCAGGGACAGAATACGGCAGGAGCTCAAAGCAGGAGGCAGAGCCTGACTCAAAGAAAAGGGTCGGCAACTTCAGTGAAGAAGCAGGTTCCTTCTGAGAACGGTAGCACTGGGAATGGTAGCATTGGATCTTTCAGGAAATCGGCGACGCCGCTTTCACCACCAACCTCGGGGGAGAGGACCGTGAAGAGGCTGAGATTGTCCAAGGCGCTCACTATTCCAGAGGGCACGTCGGTGTACGATGCTTGCCGTCGTATGGCCATGCGCAGGGTCGACGCTGCTCTGCTCACGGATCACAGCGCCTTACTCTCTGGAATCATAACCGACAAGGATGTGGCAACGAGGGTTATAGCTGAGGGTTTGAAGCCTCGCGACACACCGGTTTCAAAGGTCATGACGCGGAATCCAATCTTTGTCATGGCGGAGTCTTCGGCCGTAGAAGCCCTCGAGAAGATGATTGATGGGAAGTTTAGACACTTGCCGGTTGTGGAAAATAGCGAGGTCATTGCTCTGCTTGATATTACGAAGTGCCTCTATGACGCAATAGCAAAGATGGAAAAGGTCGCGGAAAAGGGCAGTGCTATTGCTGCTGCCGTCGAAGGCATCGAAAGACAATTTGGAGACGCTCCCAGTTCTTTTATTGAAACACTACGGGAACAAATATTCAGGCCCACTTTATCAACAGTCATCGCGGAAAATACAAAGGTGGCAACAGTTTCACCGTCTGAATCTGTGTATATGGCCGCAAAGAAGATGCGTGAATTTCGAGTCAATTCAGTCATCGTCACAACTGGGAATAAGCCTCAAGGAATTCTAACTTCAAAGGATTTGCTTACACGGATTGTTGCACACAACCTTTATCCAGAATCAACCCTCGTTGAAAAGGTGATGACACCAAGTCCAGACTGTACAACTGTTGACACAACAATTGTTGATGCATTGCACACCATGCACGATGGGAAATTTTTACATCTTCCAGTTGTTGATAAAGATGGATACATTTTGGCCTGTCTGGATGTTTTACAGCTAACACATGCAGCCATGGCCATGGTGGGAGGTTCAAGCTGTGCTGCAAGTGACACAGCAAGCACAATGATGCAGAAATTCTGGGATTCGACTCTGACATTAGAGCCACAGGAGATTGATGAGGATGGTCACAGTGATTTCTCTCCAAGGCAGTCAGTTGATGGTATAGAATCAGTAAAATCAGGATATCCATTGTTAGGTCTTGCGAATACATTTGATTTTAAGTTGCGCGATTCTAAGGGTCGCATTCATCGTTTCAACTGTGGATTTGAGAGCTTGACAGAGCTTGCTTCTGCTGTTGTTCAACGAATAGGAGATGATATTGATCAACTCCGGCCACCTCAGATTTTGTATGAAGATGATGAAGGTGATAAGGTCTTACTCTCCACTGATGGTGACCTTGTTGCAGCTGTAAATCATGCCAGGCAAGCAGGTTTGAAGGGACTGAAATTGCATGTTGATAGCTCGGTTCCAGAGGATAAGAAGACAGTTACGTCTACAGATTCTGTTGAGTTCGATCTTGCACGAAGGCATGACCGGTCTTCATCATACAGGACAGTTGTTGTAGGAGTGGCTTTGTTGGCAGGTGTTAGTATCTTGGTATATTTGAAAAGATCATCAAAGTAA___AAGAACTAAACACGCTTGGCTTACAGGATCTCAAGGAAGGTAGATGCTTTGGTTTACAGTGATCAATTTAATATTGACACTTTAAAGTATATCAAGGAAAGTGGATGCCTTGGTTTACAGTGACCACTTAATTATTTCTAGATTTTAGTTAAGGAAATAGTAGATCTGTTTCAGGGTTCAACCAGATGTGGATTAAGCTATCTCGTTTAAATTTTAGTAAAAACCTACAAGGCAGCCTTTGATCGTAGTGTACTTGAGAT

Fln Alignment:

sp_v1.1_unigene8602___SVYDACRRMAMRRVDAALLTD--HSALLSGIITDKDVATRVIAEGLKPRDTPVSKVMTRNP--IFVMAESSAVEALEKMIDGKFRHLPVVENSEVIALLDI
A9NPZ1______________TVYDAVKSMTQHNVGALLVVKPVEEKSIAGIITERDYLRKIIVQGRSSKTTKVGDIMTEENKLITVTSDTKVLKAMQLMTDNRIRHIPVVEGKSMLGMVSI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
324	16		83		0.994512
434		37		62	1.0
485		20	80		0.995493
800			87	12	0.992554
807		12	87		0.992554
1061		33		66	0.997452
1081			12	87	0.992554
1082			12	87	0.992554
1765		83	16		0.999991
1841		15		84	0.999986
1870	25		75		1.0
2046	40		60		1.0
2070	33		66		0.997452
2185			42	57	1.0
2195	36	63			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain