SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8586

Length: 1659 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8586

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERM multi-domain protein	-	-	4.0e-05	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPC4

Fln msg:

Fln protein: MGNSSDFELPEEILRVLPTDPYDQLDLARKITSIAIATRVSKLEADNGKLRHKLTEKDQLIYELHEKITQLEYALQQASDHFARALDEQRKLTNERNALASTVRKLNRDVAKLEAFKKTLMQSLHEDDETPQSEVTESTATPLLGYTNPSVSSSLREEASNDGLANQAGNGSIETSNSVEEEESRAEIDASRQGGQSFSLTPYLTPRRTPTGTPKMISAAGSPKRSAMSAAGSPKRSSTAVSPRGHSVSGSPTRRPYEGRVSSLPPTHHATAPNSPPHRRALPVRTPRVDGKEFFRQARSRLSYEQFSAFLANIKELNAHRQSREETLQKADEIFGSDNKDLYLAFDGLLSRHLPQ*

Protein Length: 358

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAATGTCAGGAGGGCTGTTCACAGATTTACAGAATGAATGAGAACGAAATTTAATGTTGCGTAAGGCGGAGAGCCAGAGAATCACCTCTGTTTCGTGTTTGAATGTGTACGAAGGCACCTGGGCCGGTCGCACTGATCATCCCATAAATACCCACCTGCTGAAGAAAGGGCAATTGAATAAATAAAATCGATCCAGCGAGTTGCCGTGCAAT_-_ATGGGAAATAGTTCGGATTTCGAGCTGCCAGAGGAGATCTTGAGGGTGCTCCCGACAGACCCATATGACCAGCTGGACTTGGCCAGGAAGATCACCTCTATCGCCATTGCCACTCGCGTTTCAAAGCTTGAGGCAGACAATGGTAAGCTCAGGCACAAGCTCACGGAGAAGGATCAGCTCATCTATGAGCTCCACGAGAAGATTACGCAGCTTGAATATGCACTGCAGCAAGCCAGTGATCACTTTGCCCGGGCACTCGATGAGCAGAGAAAACTTACAAATGAGAGAAATGCATTAGCATCAACTGTCAGGAAGCTTAATCGAGATGTGGCAAAGTTGGAAGCATTCAAGAAAACACTTATGCAATCACTTCATGAGGATGATGAAACACCTCAATCTGAGGTGACAGAGAGCACGGCAACCCCACTACTGGGGTACACAAATCCGTCTGTCAGCTCATCATTAAGAGAAGAGGCCAGTAATGATGGACTAGCAAATCAAGCTGGAAATGGATCCATAGAAACAAGCAATTCAGTTGAAGAAGAAGAGAGTCGTGCAGAGATTGATGCTTCAAGGCAAGGTGGGCAGAGCTTTTCATTGACACCCTATCTCACACCACGGCGTACTCCAACAGGAACACCAAAGATGATATCTGCAGCTGGTTCACCCAAAAGATCGGCTATGTCTGCAGCAGGTTCACCAAAAAGATCATCTACCGCAGTGTCTCCAAGAGGACATTCTGTGTCAGGATCTCCCACAAGGCGTCCATATGAAGGTAGAGTTTCATCATTACCACCAACTCACCATGCAACCGCACCAAATTCCCCTCCCCACAGAAGAGCACTTCCAGTGCGTACTCCACGAGTGGATGGAAAGGAGTTTTTCCGTCAAGCTAGGAGCCGGTTATCATATGAACAATTTAGTGCATTCCTTGCCAACATTAAAGAGCTAAATGCTCATCGGCAAAGCAGAGAGGAAACCCTGCAAAAAGCTGATGAGATATTTGGTTCAGACAACAAGGATTTATATCTTGCATTTGATGGGTTACTAAGCCGACATCTGCCTCAATAA___GAATACTTCTCTTTTGATTCCATGTTTACAAATGTCCCATTGCATGATGAAATTCAGTTCATACCATGTCCAAGAGCAGATATTTCTTGTGATATATGAAGAGGGTATAAACCTTAATAATTATAGCCGAAGATGGTTCGTTCTTTTCCCTTTTGTCACTTGGTTCTCCACCACATATATTATCATGTGAATAAATCTACAGTCTTGGTAGTATTAGACAACGTTGAGGACTTCTGTATGTTATAGTATATTCATATGTAGAGGTCCAGCAGGTATTCTTGGAAAAATATTTACTTTTGACTGGCTTAGGAAATCAATGGGTTTTCTCTTGCAAGAAGGGGTTTGAGGCT

Fln Alignment:

sp_v1.1_unigene8586___MGNSSDFELPEEILRVLPTDPYDQLDLARKITSIAIATRVSKLEADNGKLRHKLTEKDQLIYELHEKITQLEYALQQASDHFARALDEQRKLTNERNALASTVRKLNRDVAKLEAFKKTLMQSLHEDDETPQSEVTESTATPLLGYTNPSVSSSLREEASNDGLANQAGNGSIETSNSVEEEESRAEIDASRQGGQSFSXXXXXXXXXXXXXXXKMISAAGSPKRSAMSAAGSPKRSSTAVSPRGHSVSGSPTRRPYEGRVSSLPPTHHATAPNSPPHRRALPVRTPRVDGKEFFRQARSRLSYEQFSAFLANIKELNAHRQSREETLQKADEIFGSDNKDLYLAFDGLLSRHLPQ
B8LPC4______________MGNSSDFELPEEILRVLPTDPYDQLDLARKITSIAIASRVSKLEADNGKLRNKLTEKDQLIYELHEKITQLEYALQEASDHFARALDEQRKLANERNALASTVKKLNRDVAKLEAFKKTLMQSLHEDDETLQSEATESTTTPLLTYTKPSISSSLREEVSNDGLANQAGNGTIETSSSV-EEESHAETDASRQGGQRFSLTPYLTPRRTPTGTPKLISAAGSPKRSSMSAAGSPKRSSSAVSPRGHSVSGSPTRRLYEGRVPSLPPTHHATAPNSPPHRRALPVRTPRVDGKEFFRQARSRLSYEQFSAFLANIKELNAHRQSREETLLKADEIFGSDNKDLYLAFDGLLSRHLPQ

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
154		14		85	0.993533
270	90		10		0.90298
656	26		73		1.0
827	83		16		0.994512
1088	11		88		0.923564
1215	90		10		0.90298
1273	88	11			1.0
1275			11	88	1.0
1277		11	88		1.0
1296	92		7		0.999532
1304		92	7		0.999532
1305	92		7		0.999532
1306	92	7			0.999532
1308	92		7		0.999532
1309	92			7	0.999532
1310		7	92		0.999532
1312	92	7			0.999602
1316	7			92	0.999602
1375	86		8	5	0.999998
1378			5	91	0.99441
1380		94		5	0.998578
1381	86		5	8	0.999998
1382	86			13	1.0
1383		5	94		0.998578
1384	91	2	5		0.99441
1385		5	94		0.998578
1388		8	86		0.999998
1389	91	5			0.993509
1390	5			94	0.998397
1473		5		94	0.9982
1475		94	5		0.9982
1481		94		5	0.9982
1507			3	96	0.980996
1597			36	63	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain