SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8552

Length: 2002 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8552
ATGGGGCGAAAAAGGAAACGCCTCGATTTCAGTGGCCCATATTGTTTTGTCACGTTCCCTGTATAGATACTGTGCCACAATGGCCGGCCTCTATGGAGATTCCCGTGAAGATATGGACCGTCTGCAGTTCCCCCACGATCCCGTCATATTCGGTTGTGATTCACTTTTTTTATTATCAGTAAGCGGTTGTGATTCACTTTATGTGTAAGCTGCTCATACATCCCAATTGCCACGGCACGCTACTGATTCACCCTTGCCCGATTCTTTCCCAGCTCGCCTCCTTCCTATAAAAACGAAATATTGCAACTGACAGCACTGCACATGTAATACATACAGACAAGATTCAGTGCAAGTTTGGCGAAAGGAATAATGGCCTCCTCAATGGTCTTGAGGCTATCAATTTCCTCCTGCTCTAAATACCGCAAAGACGTTTTGGGTTCCAATCTCAGTTCTACAACGCCTAGTTTTGGCCAAAGGATTAGTACTAGTACCGATTGTGGTAGTCTCAGAATCATCCATCTGAATCCTTACTTCTCCAATGCTTGCAGGAAATGCAGAAACCCAATTGTGAGGACAGCCACATCGGACTCAGAGGCTAAAGATGGTTTCCCAGATCTGGGTGATGAAAATAAGCAATTGGGTGATGATAGTTTGCATGCGAAAAATCCATCTTATACACAATGGGATGCCCTGACATCCACCATTGCAGCCTCTTCTAACATACCGTTTATCCTCCTGCAACTGCCACAGATTATGCTGAATGCTCAGAATCTATTGGCTGGAAACAAAACTGCACTGTTTGCATTGGGATGGCTGGGGCAATTAACTGGATTGTTGGGAAATCTCTCGCTGCTCTCATATTTTGTAAAGAAAAGGGAGTCTGGAACTATTGTTGTACAGACAGTGGGAGTAATATCGATTTATTGTGTTCTTTTCCAGCTTGCTATGGCTGGAGCCATGCCTTCTACCCTTTTCATTGCCACTTCTGTCGCTGTAGGTTTAGGCCTAATTTTGAATTTTCTCAACTATTACAATCTGCTTAATGCTAGCATATGGAGGCTTTGGGAAGACTGTATTACAATTGGTGGACTCTCTGTTCTTCCACAGGTTATGTGGTCGACTTTCGTCCCTTATCTACCTCAAAGCATTCTACCAGGGATTTTATCATTTGCATTGTCCTTAACAACTATTATTCTGGCTCGATCTGGAAAACTTTCAGAGAAGGCTGTGAAACTTGTGGGATCAACCTCAGGCTGGACTGCTACTTTACTGTTTATGTGGATGCCCATAGCACAAATGTGGACGAACTACCTTAATCCTAACAACATTCGAGGTTTATCGGTTGATTCAATTCTTCTGGCCATGATTGGCAATGGTCTTCTGATTCCACGAGCCCTGTTTACCCGTGATATCATGTGGTTCACTGGTTCATCTTGGGCGGCCTTATTGTATGGTTGGGGAAATATTCTCAGTATTTACATCTTCAGAGGCATTGGCAAGACATACTTCTTGGCAGTTACCAGTGCTCTGATATTGTGGCTAGGAACAATATTTTGGAGGGATGCCAAGGCCTATGGATTGAACTCGCCATTTAGCTCCCTGAAACAACTGATGCCTGGTTCCGTGTAGAAAACGAAATAGTGTATTTCCGGCCTCGAGACTAATAAAGCATGAACATTTATTTGAGGATTCTGATTAAGATGTCATACAAACATTTAGAAGAATTGAAAGTAGTAGATATCTTCTGGATGAATGAATCCCACATTGGCTTAGAAGGGCCGTAAAAAAACTTTGTGGATACTACATTCTCTTTCAAATGATTATGCCTAATACAAGGATGGGGAATGACAAAAAGCAGAATCTGTTAAATAATAAAAGTCATATGATAAACAGGACTTCTTTGGAGGCTTGCTCTAGAGGGAGCAATGCACAGGTGCTTGTAAGCAGAACTTGATTATTCATTGATTCTTGTATTATATTTATTAGATAAGTTTATAAAATG

Ace file of the UniGene sp_v1.1_unigene8552 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Maltose transporter n=1 Tax=Malus x domestica RepID=Q0GR04_MALDO	-	-	58%
FL-Next	sp=Maltose excess protein 1-like, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	64%
Blast2go	root cap 1	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	starch catabolic process	GO:0005983	Biological Process	76%
Blast2go	maltose metabolic process	GO:0000023	Biological Process	76%
Blast2go	response to gravity	GO:0009629	Biological Process	76%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	76%
Blast2go	cell communication	GO:0007154	Biological Process	76%
Blast2go	response to nematode	GO:0009624	Biological Process	76%
Blast2go	maltose transmembrane transporter activity	GO:0005363	Molecular Function	76%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q7XTQ5

Fln msg:

Fln protein: MASSMVLRLSISSCSKYRKDVLGSNLSSTTPSFGQRISTSTDCGSLRIIHLNPYFSNACRKCRNPIVRTATSDSEAKDGFPDLGDENKQLGDDSLHAKNPSYTQWDALTSTIAASSNIPFILLQLPQIMLNAQNLLAGNKTALFALGWLGQLTGLLGNLSLLSYFVKKRESGTIVVQTVGVISIYCVLFQLAMAGAMPSTLFIATSVAVGLGLILNFLNYYNLLNASIWRLWEDCITIGGLSVLPQVMWSTFVPYLPQSILPGILSFALSLTTIILARSGKLSEKAVKLVGSTSGWTATLLFMWMPIAQMWTNYLNPNNIRGLSVDSILLAMIGNGLLIPRALFTRDIMWFTGSSWAALLYGWGNILSIYIFRGIGKTYFLAVTSALILWLGTIFWRDAKAYGLNSPFSSLKQLMPGSV*

Protein Length: 421

Fln nts: ATGGGGCGAAAAAGGAAACGCCTCGATTTCAGTGGCCCATATTGTTTTGTCACGTTCCCTGTATAGATACTGTGCCACAATGGCCGGCCTCTATGGAGATTCCCGTGAAGATATGGACCGTCTGCAGTTCCCCCACGATCCCGTCATATTCGGTTGTGATTCACTTTTTTTATTATCAGTAAGCGGTTGTGATTCACTTTATGTGTAAGCTGCTCATACATCCCAATTGCCACGGCACGCTACTGATTCACCCTTGCCCGATTCTTTCCCAGCTCGCCTCCTTCCTATAAAAACGAAATATTGCAACTGACAGCACTGCACATGTAATACATACAGACAAGATTCAGTGCAAGTTTGGCGAAAGGAATA_-_ATGGCCTCCTCAATGGTCTTGAGGCTATCAATTTCCTCCTGCTCTAAATACCGCAAAGACGTTTTGGGTTCCAATCTCAGTTCTACAACGCCTAGTTTTGGCCAAAGGATTAGTACTAGTACCGATTGTGGTAGTCTCAGAATCATCCATCTGAATCCTTACTTCTCCAATGCTTGCAGGAAATGCAGAAACCCAATTGTGAGGACAGCCACATCGGACTCAGAGGCTAAAGATGGTTTCCCAGATCTGGGTGATGAAAATAAGCAATTGGGTGATGATAGTTTGCATGCGAAAAATCCATCTTATACACAATGGGATGCCCTGACATCCACCATTGCAGCCTCTTCTAACATACCGTTTATCCTCCTGCAACTGCCACAGATTATGCTGAATGCTCAGAATCTATTGGCTGGAAACAAAACTGCACTGTTTGCATTGGGATGGCTGGGGCAATTAACTGGATTGTTGGGAAATCTCTCGCTGCTCTCATATTTTGTAAAGAAAAGGGAGTCTGGAACTATTGTTGTACAGACAGTGGGAGTAATATCGATTTATTGTGTTCTTTTCCAGCTTGCTATGGCTGGAGCCATGCCTTCTACCCTTTTCATTGCCACTTCTGTCGCTGTAGGTTTAGGCCTAATTTTGAATTTTCTCAACTATTACAATCTGCTTAATGCTAGCATATGGAGGCTTTGGGAAGACTGTATTACAATTGGTGGACTCTCTGTTCTTCCACAGGTTATGTGGTCGACTTTCGTCCCTTATCTACCTCAAAGCATTCTACCAGGGATTTTATCATTTGCATTGTCCTTAACAACTATTATTCTGGCTCGATCTGGAAAACTTTCAGAGAAGGCTGTGAAACTTGTGGGATCAACCTCAGGCTGGACTGCTACTTTACTGTTTATGTGGATGCCCATAGCACAAATGTGGACGAACTACCTTAATCCTAACAACATTCGAGGTTTATCGGTTGATTCAATTCTTCTGGCCATGATTGGCAATGGTCTTCTGATTCCACGAGCCCTGTTTACCCGTGATATCATGTGGTTCACTGGTTCATCTTGGGCGGCCTTATTGTATGGTTGGGGAAATATTCTCAGTATTTACATCTTCAGAGGCATTGGCAAGACATACTTCTTGGCAGTTACCAGTGCTCTGATATTGTGGCTAGGAACAATATTTTGGAGGGATGCCAAGGCCTATGGATTGAACTCGCCATTTAGCTCCCTGAAACAACTGATGCCTGGTTCCGTGTAG___AAAACGAAATAGTGTATTTCCGGCCTCGAGACTAATAAAGCATGAACATTTATTTGAGGATTCTGATTAAGATGTCATACAAACATTTAGAAGAATTGAAAGTAGTAGATATCTTCTGGATGAATGAATCCCACATTGGCTTAGAAGGGCCGTAAAAAAACTTTGTGGATACTACATTCTCTTTCAAATGATTATGCCTAATACAAGGATGGGGAATGACAAAAAGCAGAATCTGTTAAATAATAAAAGTCATATGATAAACAGGACTTCTTTGGAGGCTTGCTCTAGAGGGAGCAATGCACAGGTGCTTGTAAGCAGAACTTGATTATTCATTGATTCTTGTATTATATTTATTAGATAAGTTTATAAAATG

Fln Alignment:

sp_v1.1_unigene8552___KNPS-YTQWDALTSTIAASSNIPFILLQLPQIMLNAQNLLAGNKTALFAXXXXXXXXXXXXXXXXLSYFVKKRESGTIVVQTVGVISIYCVLFQLAMAGAMPSTLFIATSVAVXXXXXXXXXXXXXXXNASIWRLWEDCITIGGLSVLPQVMWSTFVPYLPQSILPGILSFALSLTTIILARSGKLSEKAVKLVGSTSGWTATLLFMWMPIAQMWTNYLNPNNIRGLSVDSILLAMIGNGLLIPRALFTRDIMWFTGSSWAALLYGWGNILSIYIFRGIGKTYFLAVTSALILWLGTIFWRDAKAYGLNSPFSSLKQLMPG
Q7XTQ5______________KDPKKYQEWDSLTAKFAGAANVPFLLLQLPQIILNARNLLAGNKTALFAVPWLGMLTGLLGNLSLLSYFAKKKETGAVIVQTLGVISTYVVIAQLAMAESMPLPQFVATSAVVAAGLLLNFLNYFGWLPGTLWLLWEDFITIGGLAVLPQVMWSTFVPFIPNSLLPGIISGSLAATAVVMARMGKLSKGGINFVGSLSGWTATLLFMWMPVAQMWTNYLNPSNIKGLSAFTMLLAMIGNGLMIPRAVFIRDLMWFTGSAWASFLQGWGNLACMYCFDSISRESFLATTFGLLLWLGFTLWRDTIAHGNSSPVTSLKELLFG

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
315		87		12	0.992554
334	11	88			0.923564
335			11	88	0.923564
337			11	88	0.923564
340		11		88	0.923564
347	11		88		0.923564
352	11	88			0.923564
353		11	77	11	0.968132
356	88	11			0.923564
357	75		25		1.0
360		85	14		0.993533
366			14	85	0.993533
367		14		85	0.993533
369	10		90		0.90298
371			10	90	0.90298
372			10	90	0.90298
412	90		10		0.90298
416		80		20	0.999996
421			20	80	0.999996
422	20	80			0.999996
423	80	20			0.999996
425			20	80	0.999996
1629		13	86		0.999973
1634	13			86	0.999973
1635			13	86	0.999973
1636	86		13		0.999973
1638		13		86	0.999973
1639	13	86			0.999973
1641			14	85	0.999981
1642	14			85	0.999981
1673	15			84	0.999986
1687	81	18			0.999994
1688		18	81		0.999994
1689		18		81	0.999994
1691	18	81			0.999994
1776	85	14			0.993533
1781	14		85		0.993533
1786	14			85	0.993533
1787	85	14			0.993533
1788	14			85	0.993533
1790	85	14			0.993533
1791		14	85		0.993533
1792	14	85			0.993533
1795		85	14		0.993533
1797		14		85	0.993533
1802	85		14		0.993533
1813		83	16		0.994512
1815		83	16		0.994512
1816	83			16	0.994512
1819	16	83			0.994512
1822		16		83	0.994512
1823	16			83	0.994512
1825		83	16		0.994512
1827		16	83		0.994512
1829		16		83	0.994512
1830	83		16		0.994512
1832		16		83	0.994512
1833	83		16		0.994512
1910	75	25			1.0
1911		25		75	1.0
1914			75	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain