SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8536

Length: 851 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8536 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative multidrug resistance protein n=5 Tax=Poaceae RepID=MDR_ORYSJ	-	-	65%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	63%
Blast2go	abc transporter family protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	85%
Blast2go	ABC transporter, conserved site	IPR017871	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
593	87		12		0.992554
706			10	90	0.90298
718		10	90		0.90298
720	10	70		20	0.999998
722		10	90		0.90298
723	90	10			0.90298
724		90		10	0.90298
736	88	11			0.923564
750	14		85		0.993533
762			14	85	0.993533
768			85	14	0.993533
777		14		85	0.993533
783		83		16	0.994512
786	83		16		0.994512
788		16		83	0.994512
807	75		25		0.996473
816			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain