SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8518

Length: 715 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8518

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Prenylated Rab acceptor protein, putative	-	-	3.0e-27	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	protein	-	-	4.75907e-28	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	4.75907e-28	65%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	4.75907e-28	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Prenylated rab acceptor PRA1	IPR004895	-	4.75907e-28	65%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
35	33	33		33	0.997753
36		33	33	33	0.997753
37		33	66		0.997452
38		33	66		0.997452
39		33	66		0.997452
94	80	20			0.995493
410	90	10			0.90298
414			90	10	0.90298
514		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain