SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8506

Length: 2045 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8506
ATGGGGAGACTTTGCGAAGGAAGACGCAGAGAAAATGGAGAAATTGACACGATGTGCTGCGAATCATCCTCCCCTGTCACCGATCCGCTTCATAGAGAGAGCTGCCATCGTCTATGGGGACTCCACCTCTGTCGTCTACAATTCCACTCGTTATACGTGGTCTCACACCTACCAACGCTGCCGCAGGCTCGCCTCTGCTCTCTGTGCCCACAATATCTTGCCTGGGGATGTGGTCTCTGTGGTGGCTCCCAACATTCCTGCCATTTACGAAATGCATTTCGCAGTTCCAATGGCAGGGGCCGTTCTTAACACCGTCAACACGCGTCTGGATGCTCGAACTATGGCCGCTCAATTCAATCACTGTCAGCCCAAGATTGTGTTTGCGGATTACCAATTCGTGCCTCTCGTAACGGAAGCTCTACACAGGACGAACCATAGGCCCACCCTGGTAATCATCCAGGAGCTCGTCAATGGCAGAGAAATAGTTCCGGCGAGTACAGCAATAGCCACAACGTACGAAGGGCTATTGCAAGAGGGAGATCCCGAGTTCGAGACACGGTGGCCGGAGGACGAATGGCAGGGTATCGTTGTGAATTATACGTCGGGCACAACCTCTGCTCCCAAGGGAGTAGTCCACAGCCACAGGGGAATCTACTCTATGGTTATGGATACTCTGTTAACGTGGGGTATGAAGTCACGGCCTGTTTATCTGTGGACTCTCCCCATGTTTCACTCTAATGGCTGGTCTTTCCCATGGGGAATAGCTGCCCTCGGCGGCACAAATATCTGCTTAAGGAAATTCGACGGCCACATCATCTATAAAGCCCTCAACGACCACCAGGTCACCCATCTCTGCGCCGCGCCTGTGGTGCTGACCATGATTGCAAACGCAGATCCATCCGAGAGGCCTCCTTTGCCCCATCGGGTGGAGATCTTAACCGGCGGTTCTCCTCCACCCGCCGCTGTGCTGCTGAAGATTGAAGAGCTAGGATTCTGTGTTACTCATGGGTATGGCCTCACAGAGACCGCAGGAGTGGTGGTTTCATGCGCTTGGAAATCTGAGTGGGACAGACTTGCAGCGAACGAGAGGGCTCAAATGAAAGCGAGACAGGGCATTAGGTCGCTGGGTCTGGCTGAGTTGGACGTGAAGGATCCGGATACCATGGCTAGTGTGGCTAGAGACGGAGTGAAGGTGGGCGAGGTTATGATGAGAGGGCCGAGCATTATGAAGGGTTATTTCAAGGACGAGAAGAGCACAGGCAAAGCCATGGAAGGTGGGTGGTTCCACACAGGGGATGTGGGAGTAATCCACCCGGACGGTTATCTACAAATAAAGGACCGTTCCAAGGACGTTATAATCTCAGGTGGGGAGAACATCAGTAGCGTGGAGGTGGAGTCTATGTTGTATTCCCATCCCATGGTTGTTGAGGCAGCGGTTGTGGCGAGGCCTGATCCTTTCTGGGGAGAGACCTCCTGTGCCTTTGTCAGTACCACAGGAGGGCCAAGCAATCAGAGTCATTCGGGGGTAAGGGTAACAGAGGCAGAGATGATTTCGTTCTGCAGAGAGAGGCTGCCTCACTACATGGTTCCCAAAACTGTGGTGTTCATGGAGTCACTGCCCAAGACCTCCACAGGTAAAATTCAAAAGTTTCTTCTCAGGGAAATGGCTAAAAAGCTGCCACACAAAAAGCGGCAGTGGGAAAAACTGGATATGGTAAGCAGGCTCTGAGCACTGGTCCAAAAATAGTTATCAAAATGATTGGACTGAACTCTTCGATTGAACTGGTATAGATTCACTGTAATGTAGAAAAAAAAGGGCCAAGTGCGATTGTGTATTAGTGTTGTTCACATAAGATACCTCTTCGGCAAACATCATCCAAGCTCCAGACTGTTTACACACTTACCATGAATGGATGCATCATTTGTGGCTCCACTATTTATTATTGTGCTTGCATAGTGCTAAGTGTTTATTGTGCTTGTATGCTACCCGGTGTTTCTTTGCCTTCCATTTAAGATAAACCAAATAAAGTGTGTATGTTTTGCAA

Ace file of the UniGene sp_v1.1_unigene8506

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AMP-binding protein n=4 Tax=Arabidopsis RepID=Q9FFE6_ARATH	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	acyl:coa ligase acetate-coa synthetase-like protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg:

Fln protein: MEKLTRCAANHPPLSPIRFIERAAIVYGDSTSVVYNSTRYTWSHTYQRCRRLASALCAHNILPGDVVSVVAPNIPAIYEMHFAVPMAGAVLNTVNTRLDARTMAAQFNHCQPKIVFADYQFVPLVTEALHRTNHRPTLVIIQELVNGREIVPASTAIATTYEGLLQEGDPEFETRWPEDEWQGIVVNYTSGTTSAPKGVVHSHRGIYSMVMDTLLTWGMKSRPVYLWTLPMFHSNGWSFPWGIAALGGTNICLRKFDGHIIYKALNDHQVTHLCAAPVVLTMIANADPSERPPLPHRVEILTGGSPPPAAVLLKIEELGFCVTHGYGLTETAGVVVSCAWKSEWDRLAANERAQMKARQGIRSLGLAELDVKDPDTMASVARDGVKVGEVMMRGPSIMKGYFKDEKSTGKAMEGGWFHTGDVGVIHPDGYLQIKDRSKDVIISGGENISSVEVESMLYSHPMVVEAAVVARPDPFWGETSCAFVSTTGGPSNQSHSGVRVTEAEMISFCRERLPHYMVPKTVVFMESLPKTSTGKIQKFLLREMAKKLPHKKRQWEKLDMVSRL*

Protein Length: 566

Fln nts: ATGGGGAGACTTTGCGAAGGAAGACGCAGAGAAA_-_ATGGAGAAATTGACACGATGTGCTGCGAATCATCCTCCCCTGTCACCGATCCGCTTCATAGAGAGAGCTGCCATCGTCTATGGGGACTCCACCTCTGTCGTCTACAATTCCACTCGTTATACGTGGTCTCACACCTACCAACGCTGCCGCAGGCTCGCCTCTGCTCTCTGTGCCCACAATATCTTGCCTGGGGATGTGGTCTCTGTGGTGGCTCCCAACATTCCTGCCATTTACGAAATGCATTTCGCAGTTCCAATGGCAGGGGCCGTTCTTAACACCGTCAACACGCGTCTGGATGCTCGAACTATGGCCGCTCAATTCAATCACTGTCAGCCCAAGATTGTGTTTGCGGATTACCAATTCGTGCCTCTCGTAACGGAAGCTCTACACAGGACGAACCATAGGCCCACCCTGGTAATCATCCAGGAGCTCGTCAATGGCAGAGAAATAGTTCCGGCGAGTACAGCAATAGCCACAACGTACGAAGGGCTATTGCAAGAGGGAGATCCCGAGTTCGAGACACGGTGGCCGGAGGACGAATGGCAGGGTATCGTTGTGAATTATACGTCGGGCACAACCTCTGCTCCCAAGGGAGTAGTCCACAGCCACAGGGGAATCTACTCTATGGTTATGGATACTCTGTTAACGTGGGGTATGAAGTCACGGCCTGTTTATCTGTGGACTCTCCCCATGTTTCACTCTAATGGCTGGTCTTTCCCATGGGGAATAGCTGCCCTCGGCGGCACAAATATCTGCTTAAGGAAATTCGACGGCCACATCATCTATAAAGCCCTCAACGACCACCAGGTCACCCATCTCTGCGCCGCGCCTGTGGTGCTGACCATGATTGCAAACGCAGATCCATCCGAGAGGCCTCCTTTGCCCCATCGGGTGGAGATCTTAACCGGCGGTTCTCCTCCACCCGCCGCTGTGCTGCTGAAGATTGAAGAGCTAGGATTCTGTGTTACTCATGGGTATGGCCTCACAGAGACCGCAGGAGTGGTGGTTTCATGCGCTTGGAAATCTGAGTGGGACAGACTTGCAGCGAACGAGAGGGCTCAAATGAAAGCGAGACAGGGCATTAGGTCGCTGGGTCTGGCTGAGTTGGACGTGAAGGATCCGGATACCATGGCTAGTGTGGCTAGAGACGGAGTGAAGGTGGGCGAGGTTATGATGAGAGGGCCGAGCATTATGAAGGGTTATTTCAAGGACGAGAAGAGCACAGGCAAAGCCATGGAAGGTGGGTGGTTCCACACAGGGGATGTGGGAGTAATCCACCCGGACGGTTATCTACAAATAAAGGACCGTTCCAAGGACGTTATAATCTCAGGTGGGGAGAACATCAGTAGCGTGGAGGTGGAGTCTATGTTGTATTCCCATCCCATGGTTGTTGAGGCAGCGGTTGTGGCGAGGCCTGATCCTTTCTGGGGAGAGACCTCCTGTGCCTTTGTCAGTACCACAGGAGGGCCAAGCAATCAGAGTCATTCGGGGGTAAGGGTAACAGAGGCAGAGATGATTTCGTTCTGCAGAGAGAGGCTGCCTCACTACATGGTTCCCAAAACTGTGGTGTTCATGGAGTCACTGCCCAAGACCTCCACAGGTAAAATTCAAAAGTTTCTTCTCAGGGAAATGGCTAAAAAGCTGCCACACAAAAAGCGGCAGTGGGAAAAACTGGATATGGTAAGCAGGCTCTGA___GCACTGGTCCAAAAATAGTTATCAAAATGATTGGACTGAACTCTTCGATTGAACTGGTATAGATTCACTGTAATGTAGAAAAAAAAGGGCCAAGTGCGATTGTGTATTAGTGTTGTTCACATAAGATACCTCTTCGGCAAACATCATCCAAGCTCCAGACTGTTTACACACTTACCATGAATGGATGCATCATTTGTGGCTCCACTATTTATTATTGTGCTTGCATAGTGCTAAGTGTTTATTGTGCTTGTATGCTACCCGGTGTTTCTTTGCCTTCCATTTAAGATAAACCAAATAAAGTGTGTATGTTTTGCAA

Fln Alignment:

sp_v1.1_unigene8506___AKEDAEKMEKLTRCAANHPPLSPIRFIERAAIVYGDSTSVVYNSTRYTWSHTYQRCRRLASALCAHNILPGDVVSVVAPNIPAIYEMHFAVPMAGAVLNTVNTRLDARTMAAQFNHCQPKIVFADYQFVPLVTEAL------HRTNHRPTLVII--QELVNGREIVPASTAIATTYEGLLQEGDPEFETRWPEDEWQGIVVNYTSGTTSAPKGVVHSHRGIYSMVMDTLLTWGMKSRPVYLWTLPMFHSNGWSFPWGIAALGGTNICLRKFDGHIIYKALNDHQVTHLCAAPVVLTMIANADPSERPPLPHRVEILTGGSPPPAAVLLKIEELGFCVTHGYGLTETAGVVVSCAWKSEWDRLAANERAQMKARQGIRSLGLAELDVKDPDTMASVARDGVKVGEVMMRGPSIMKGYFKDEKSTGKAMEGGWFHTGDVGVIHPDGYLQIKDRSKDVIISGGENISSVEVESMLYSHPMVVEAAVVARPDPFWGETSCAFVSTTG-GPSNQSHSGVRVTEAEMISFCRERLPHYMVPKTVVFMESLPKTSTGKIQKFLLREMAKKL--PHKKR
A9NWM6______________AQVEVKDIDDLPKCPANYTALTPLWFIQRAALVYPKRKSVIHGARQYTWDQTYERCRRLASALAKRSIGPGTTVGVLAPNIPAAYEAHFGIPMAGAVLNSINIRLDARTIAFLLEHSRAVAVLVDQDFFMLLQEALGLMAKKHGSGFEPPFLVVIGDETCDEGNLKRALRSGAVEYEDFLQEGDPGFEWQPPDDEWQSIALGYTSGTTSSPKGVVLSHRGAYVASLGAALAWEMKGSGVYLWTLPMFHCNGWCYAWGMAAFCGTNICLRQVTARAIYASIAEHKVTHFCAAPVVLNTVVNCDPQDRVPIPRGISVMTAGSAPPASVLAKMEEQGFRVTHTYGLSETYGPSVVCAWKEEWDSLPPTDRARMNARQGVRYISLEGLDVVNPDSMVPVPADGSTVGEIVMRGNMMMKGYLRNPEANRESFRGGWFHSGDLAVKHPDGYIEIKDRSKDIIISGGENISSVEVENALYGHPRVLEASVVARPDERWGETPCAFITLKGSGDPNEDESRI---GQDIMNYCRARLPGYMVPRSVVF-GPLPKTATGKVQKHILRSKAKQMGSPPKSR

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
232			20	80	0.995493
296	66		33		0.997452
386	33		66		0.997452
398		66		33	0.997452
403		66		33	0.997452
424	60		40		1.0
439	40		60		1.0
487		50		50	1.0
492	50		50		1.0
505		50		50	1.0
515	50		50		1.0
543		75		25	0.996473
551	40	60			1.0
565		83		16	0.994512
567			83	16	0.994512
568	83	16			0.994512
574	83	16			0.994512
575	83			16	0.994512
580	83			16	0.994512
582			83	16	0.994512
583		16	83		0.994512
584	16			83	0.994512
585	83	16			0.994512
588	16		83		0.994512
602	33		66		1.0
617		33		66	1.0
685		14	14		0.984337
686	14		71		0.984337
688		14	85		0.993533
689		14	85		0.993533
691	85			14	0.993533
692			14	85	0.993533
694	85	14			0.993533
695	85			14	0.993533
702			85	14	0.993533
705	14			85	0.993533
1120	20		80		0.995493
1332	20		80		0.995493
1567	66			33	1.0
1570		33	66		1.0
1571	66	33			1.0
1572			66	33	1.0
1573	66			33	1.0
1645	71	28			1.0
1646			14	85	0.993533
1648		85	14		0.993533
1649	71	14		14	0.984337
1650	71		14	14	0.984337
1651	85		14		0.993533
1652	71	14		14	0.984337
1653		28	71		1.0
1654	14			85	0.993533
1655		14		85	0.993533
1656			14	85	0.993533
1657		85	14		0.993533
1658		14		85	0.993533
1687		75		25	1.0
1697	16		83		0.999991
1703	10		90		0.90298
1813	62		37		1.0
1819	25			75	1.0
1856	14			85	0.993533
1859	14		85		0.993533
1865		16		83	0.994512
1914	33	66			1.0
1967	25	75			0.996473
1989		75	25		0.996473
1992		66		33	0.997452
1993		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain