SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8504

Length: 2905 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8504
ATGGGGAAAATCGCGTGACATTGGGGGTATGGGATTGTGTTTGGAACAGAAAGTTGGGGAAGCGGAGACATGGGGTGCGTGTACATACCTGTACAAAATTCGGAGGAAGAGGTCAGGGTGGCACTCGATCAACTCCCCAGAGATGCTACCGATATTCTCGACATCCTCAAAGCAGAGCAAGCGCCTCTTAATATATGGCTAATTATAGCGAGGGAATATTTTAAGCAAGGGAAAATAGATGAGTTCCTACAAATTCTCGAGGAAGGATCTAGTCGAGAAATTGATGAATACTATTCTGATGTAAGGTATGATAGAATTGCTATTTTAAATGCGCTTGGTGCATATTACAGCAACATTGGTAAAATTGAGACAAAGCAGAGAGAAAAGGAAGAGTTTTTCATCCGTGCAACCCATTATTATAATAAGGCTTCCAGAATTGATAAACATGAACCTTCTACTTGGGTTGGAAAAGGTCAGCTGCTTCTAGCAAAAGGTGATCTTGAACAAGCATATGGTGCATTCAAAATTGTACTAGATGGACAGGCTGATAATATTCCTGCTCTTCTTGGACAGGCATGTGTACAATTCAACCGTGGACGATATACCGAGTCATTGGAGCTGTATAAGAAAGCTTTGCAAGTTTATCCTGCGTGCCCCGCAGCAGTGAGACTTGGTTTAGGTCTGTGTCGGTACAAACTGGGTCAGTTCAGGAAAGCCAGACAAGCTTTTGAGCGTGTTTTACAGTTAGACCCTGAAAATGTGGAAGCTTTGGTGGCACTTGGAATAATGGATTTGCAAATGAATGAATCGGAAGGCATTCACGAAGGAATGGAAAAAATGCGGAGGGCCTTTGAGTTATATCCATACTGTGCAATGGCTTTAAATCATTTAGCCAACCATTTTTTCTTCACGGGGCAACATTTTCTTGTAGAGCAGTTAACTGAGACTGCTCTTGCTTCAACGGATCATGCTTTGATGAAATCTCATTCTTATTATAATCTTGCACGGTCTTATCATAGCAAGGGTGATTATGAGACTGCAGGTCGCTACTACATGGCATCAGTTAAGGAAAGCCAGAGGCCTCAGGATTTGTGTTGCCTTACTATGGGCTGGGGCAGGTTCAAATGAAGTTGGGAGATCTTAAGAGTTCTCTATCAAATTTTGAAAAAGTTTTGGAGGTACACCCTGAGAATTGCGAGAGCTTGAAGGCTGTAGGATATATATATGTTCAACAAGGACAGGCTGAGAAGGCTTTGGAAATGTTTAAAAAGGCAACTCGCATAGATCCCCGTGATGCGCATGCATTTATTGAGATGGGAGAGTTATTAATTTTATCAGACACCAGTGCAGCATTAGATGCTTTCAAGACGGCAAATTCTCTCCTAAAGAAAAGCAGAGAAGAAGTACCCATTGAATTACTTAATAACATTGGAGTTCTTCATTTTGAGCGTGGTGAATTTGAGTTGGCTCAAAAAAACTTTCACAGATGCATTGGGAGATGGTGTTTGGCTTGACTTCATCAATGGAGAGAATACATTGCCCCAATGTTGATTCTGCAGCTTTTCCTGCACAGTTCAAAGATACGGATTTCTTCCATCAACTGGAAGAAGATGGAATTTCACTTGAGTTACCTTGGGAGAAAGTTACTACACTTTTCAATCAGGCTAGACTGTTTGAAGAACTCCACGAGTCAGAAAAAGCAAGTATTTTATACAGGCTGATCTTATTCAAGTTTCCTGATTATGTTGATGGGTACCTACGACTGGCAGCCATGGCTTGGGCTCGAAATAATGTTCAGCTAAGTTTAGAACTGACTGGGGATGCGCTCAAGGTGGATGAAAAATCATCCAATGCTTTATCTATGCTTGGCAACATGGAGCTAAAAGCAGATGCTTGGCTCAAAGCAAAGGAAACATTTAGAATTGCGCAGGATGTGACAGGGGGCAAAGATTCTTATGCCAATCTTTCACTTGGGAATTGGAATTATTTTGCAGCAGTTCGTAATGAGAAGAAGGATTCAAAGCTGGAGGCCACACATCTTGAAAAAGCTAGAGAACTTTATTGTAAAGTATTGGCACAAAGGCCAGGCAATGTGTATGCTGCGAATGGTGCAGCTGTTGTGCTGGCTGAAAAGGGTCTATTTGATGTTTCAAAGGACATTTTTACACAGGTGCAAGAAGCTGCAGCAGGAAACATATTTGTTCAGATGCCAGATGTGTGGGTAAATCTGGCACATGTTTACTTTGCTCAAGGCCAGTTTGCACTGGCTGTGAAAATGTACCAAAACTGTTTGAGGAAATTCTATTATGGTACCGATACCCAAGTTTTATTATATTTGGCTCGAACACATTATGAGGCAGAACAGTGGCAAGATTGCAAAAGAACTTTACTAAGAGCAATACATCTGGCCCCCTCGAACTACATGTTACGGTTTGATGCTGGTATTGCAATGCAAAAATTCTCAACTTCAACACTTCAAAAGCAAAAACGAACTGCTGATGAGGTTCGCCAGGCAGTATCAGAATTAAAAAATGCACTTCGTGTATTCAGCCAGCTGTCTGCAGTGACCAATCATCACTCACATGGATTTGATGAGAAGAAAATAGAAATGCATGTTGACTACTGTAAGCATTTACTTGATGCTGCCAAAGTTCATAGAGAGGCAGCAGAACGTGAAGAGCAACAGAACCGTCAAAAACTTGAAGTTGCACGTCAACTTATCTTGGCTGAGGAAGCCCGTCGTAAAGCTGAAGAAGAACGTAAACTGCAGATGGAAAGGAGACAGCATGAAGAAATGCTACGACGGGTTAGGCAACAAGAAGAACACTTTGAACGTGTGAAGGAATTGTGGAAGGGTAAGAATAAAGACAAGGGTGATGATGATGATGAGTCTGGGCAAGCTGAG

Ace file of the UniGene sp_v1.1_unigene8504

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	VERNALIZATION INDEPENDENCE 6 n=2 Tax=Arabidopsis thaliana RepID=B5X0I6_ARATH	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	tpr repeat nuclear	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	81%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	81%
Blast2go	histone methylation	GO:0016571	Biological Process	81%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	81%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	81%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	81%
Blast2go	Tetratricopeptide repeat	IPR019734	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM70

Fln msg:

Fln protein: MLTTVSIYLMLPKFIERQQNVKSNRTVKNLKLHVNLSWLRKPVVKLKKNVNCRWKGDSMKKCYDGLGNKKNTLNV*

Protein Length: 77

Fln nts: ATGGGGAAAATCGCGTGACATTGGGGGTATGGGATTGTGTTTGGAACAGAAAGTTGGGGAAGCGGAGACATGGGGTGCGTGTACATACCTGTACAAAATTCGGAGGAAGAGGTCAGGGTGGCACTCGATCAACTCCCCAGAGATGCTACCGATATTCTCGACATCCTCAAAGCAGAGCAAGCGCCTCTTAATATATGGCTAATTATAGCGAGGGAATATTTTAAGCAAGGGAAAATAGATGAGTTCCTACAAATTCTCGAGGAAGGATCTAGTCGAGAAATTGATGAATACTATTCTGATGTAAGGTATGATAGAATTGCTATTTTAAATGCGCTTGGTGCATATTACAGCAACATTGGTAAAATTGAGACAAAGCAGAGAGAAAAGGAAGAGTTTTTCATCCGTGCAACCCATTATTATAATAAGGCTTCCAGAATTGATAAACATGAACCTTCTACTTGGGTTGGAAAAGGTCAGCTGCTTCTAGCAAAAGGTGATCTTGAACAAGCATATGGTGCATTCAAAATTGTACTAGATGGACAGGCTGATAATATTCCTGCTCTTCTTGGACAGGCATGTGTACAATTCAACCGTGGACGATATACCGAGTCATTGGAGCTGTATAAGAAAGCTTTGCAAGTTTATCCTGCGTGCCCCGCAGCAGTGAGACTTGGTTTAGGTCTGTGTCGGTACAAACTGGGTCAGTTCAGGAAAGCCAGACAAGCTTTTGAGCGTGTTTTACAGTTAGACCCTGAAAATGTGGAAGCTTTGGTGGCACTTGGAATAATGGATTTGCAAATGAATGAATCGGAAGGCATTCACGAAGGAATGGAAAAAATGCGGAGGGCCTTTGAGTTATATCCATACTGTGCAATGGCTTTAAATCATTTAGCCAACCATTTTTTCTTCACGGGGCAACATTTTCTTGTAGAGCAGTTAACTGAGACTGCTCTTGCTTCAACGGATCATGCTTTGATGAAATCTCATTCTTATTATAATCTTGCACGGTCTTATCATAGCAAGGGTGATTATGAGACTGCAGGTCGCTACTACATGGCATCAGTTAAGGAAAGCCAGAGGCCTCAGGATTTGTGTTGCCTTACTATGGGCTGGGGCAGGTTCAAATGAAGTTGGGAGATCTTAAGAGTTCTCTATCAAATTTTGAAAAAGTTTTGGAGGTACACCCTGAGAATTGCGAGAGCTTGAAGGCTGTAGGATATATATATGTTCAACAAGGACAGGCTGAGAAGGCTTTGGAAATGTTTAAAAAGGCAACTCGCATAGATCCCCGTGATGCGCATGCATTTATTGAGATGGGAGAGTTATTAATTTTATCAGACACCAGTGCAGCATTAGATGCTTTCAAGACGGCAAATTCTCTCCTAAAGAAAAGCAGAGAAGAAGTACCCATTGAATTACTTAATAACATTGGAGTTCTTCATTTTGAGCGTGGTGAATTTGAGTTGGCTCAAAAAAACTTTCACAGATGCATTGGGAGATGGTGTTTGGCTTGACTTCATCAATGGAGAGAATACATTGCCCCAATGTTGATTCTGCAGCTTTTCCTGCACAGTTCAAAGATACGGATTTCTTCCATCAACTGGAAGAAGATGGAATTTCACTTGAGTTACCTTGGGAGAAAGTTACTACACTTTTCAATCAGGCTAGACTGTTTGAAGAACTCCACGAGTCAGAAAAAGCAAGTATTTTATACAGGCTGATCTTATTCAAGTTTCCTGATTATGTTGATGGGTACCTACGACTGGCAGCCATGGCTTGGGCTCGAAATAATGTTCAGCTAAGTTTAGAACTGACTGGGGATGCGCTCAAGGTGGATGAAAAATCATCCAATGCTTTATCTATGCTTGGCAACATGGAGCTAAAAGCAGATGCTTGGCTCAAAGCAAAGGAAACATTTAGAATTGCGCAGGATGTGACAGGGGGCAAAGATTCTTATGCCAATCTTTCACTTGGGAATTGGAATTATTTTGCAGCAGTTCGTAATGAGAAGAAGGATTCAAAGCTGGAGGCCACACATCTTGAAAAAGCTAGAGAACTTTATTGTAAAGTATTGGCACAAAGGCCAGGCAATGTGTATGCTGCGAATGGTGCAGCTGTTGTGCTGGCTGAAAAGGGTCTATTTGATGTTTCAAAGGACATTTTTACACAGGTGCAAGAAGCTGCAGCAGGAAACATATTTGTTCAGATGCCAGATGTGTGGGTAAATCTGGCACATGTTTACTTTGCTCAAGGCCAGTTTGCACTGGCTGTGAAAATGTACCAAAACTGTTTGAGGAAATTCTATTATGGTACCGATACCCAAGTTTTATTATATTTGGCTCGAACACATTATGAGGCAGAACAGTGGCAAGATTGCAAAAGAACTTTACTAAGAGCAATACATCTGGCCCCCTCGAACTACATGTTACGGTTTGATGCTGGTATTGCAATGCAAAAATTCTCAACTTCAACACTTCAAAAGCAAAAACGAACTGCTGATGAGGTTCGCCAGGCAGTATCAGAATTAAAAAATGCACTTCGTGTATTCAGCCAGCTGTCTGCAGTGACCAATCATCACTCACATGGATTTGATGAGAAGAAAATAGAAATGC_-_ATGTTGACTACTGTAAGCATTTACTTGATGCTGCCAAAGTTCATAGAGAGGCAGCAGAACGTGAAGAGCAACAGAACCGTCAAAAACTTGAAGTTGCACGTCAACTTATCTTGGCTGAGGAAGCCCGTCGTAAAGCTGAAGAAGAACGTAAACTGCAGATGGAAAGGAGACAGCATGAAGAAATGCTACGACGGGTTAGGCAACAAGAAGAACACTTTGAACGTGTGA___AGGAATTGTGGAAGGGTAAGAATAAAGACAAGGGTGATGATGATGATGAGTCTGGGCAAGCTGAG

Fln Alignment:

sp_v1.1_unigene8504___MLTTVSIYLMLPKFIERQQNVKSNRTVKNLKLHVNLSWLRKPVVKLKKNVNCRWKGDSMKKCYDGLGNKKNTLNV
A9NM70______________MLNTVSIYLMLPKFIERQRNVKSNRTVKNLKLHVNLSWLMKPAVKLKKNVNCRWKGDSRKKCYDGLGNKKNTSNV

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
30	83	16			0.994512
31	16			83	0.994512
32		16	16		0.988813
33			50	33	1.0
34		16	50	16	0.988986
35	16	16	66		0.988813
37			16	83	0.994512
38			16	83	0.994512
144	87	12			0.992554
146	87			12	0.992554
147		12		87	0.992554
149		87		12	0.992554
150			12	87	0.992554
154			87	12	0.992554
155	87			12	0.992554
156			12	87	0.992554
157	87		12		0.992554
158		12		87	0.992554
160		87	12		0.992554
163		12	87		0.992554
164	87			12	0.992554
306	90		10		0.90298
324		11		88	0.923564
334	11		88		0.923564
342			11	88	0.923564
389	85		14		0.993533
733		11	88		0.923564
753		75		25	1.0
765			42	57	1.0
895	25		75		0.996473
1834		11	88		0.923564
1936	10		90		0.90298
2002	88			11	0.923564
2012	88		11		0.923564
2252	14			85	0.993533
2254			14	85	0.993533
2393	90			10	0.90298
2394		90	10		0.90298
2395			10	90	0.90298
2476		10		90	0.90298
2488	90		10		0.90298
2500	50			50	1.0
2533	90			10	0.90298
2551		12		87	0.992554
2569		87		12	0.992554
2607	87		12		0.992554
2614	75		12		0.975346
2690		71		28	1.0
2851	25		75		1.0
2911		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2875	2889	TGA TGA TGA TGA TGA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain