SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8499

Length: 1637 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8499

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Aminotransferase family protein n=1 Tax=Populus trichocarpa RepID=B9MYE9_POPTR	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	aminotransferase family protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	73%
Blast2go	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	73%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	73%
Blast2go	Tyrosine/nicotianamine aminotransferase	IPR005958	-	73%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	73%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	73%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	73%
Blast2go	Tyrosine transaminase	IPR021178	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLE0

Fln msg: your sequence is longer than subject: 443 - 403

Fln protein: MADFKDGSRFLNSRVIVTNGIQDGDMEKRVWNFRPSSPCMREMAGIRGMLAYLRSHLDPKGKSVIPLGYADPSPFECYKVSKEAEDSLVEAIRSGHYNGYAPAVGLPEARRAVAEYLSPGLPYKLGADDIYLTCGCRQAMDVTVAVLGGKDANILLPRPGYPLYEALLAYNGIEARHYNLIPERNWEIDLDHLETIADRNTVAMVLVNPNNPCGVVFSHEHLAKVAETAKKLGLLIVSDEVYAPLVFDNKPFVPMGLFATVVPVLTVGSISKRWLVPGWRLGWIVACDPNGILKETRIIEGIRNLLNVVVDPATFAQAALPNILKKTTREFYEQALQTLCQAADICYNRAQKLDVLYCLSKPQGSMFLMIKINIPCFEDINDDVEFCGKLAKEESVIVLPGSLLGMKNWIRVSFAVSPCLLEEAWDRIESFCKRHAKSTQII*

Protein Length: 444

Fln nts: AGGGGAATCTGGCGAAGCCCAATCCAATCAAAACTCCAAATCAAAACTCCAACTCCTTCCA_-_ATGGCGGACTTCAAAGATGGCAGCCGCTTCCTCAACTCGAGAGTTATCGTTACTAATGGAATACAGGATGGCGATATGGAGAAGAGAGTGTGGAATTTCAGGCCGAGCTCGCCCTGTATGAGGGAAATGGCAGGGATTCGAGGCATGCTGGCTTATCTGAGGTCTCACTTAGATCCTAAAGGAAAGAGCGTGATTCCTCTCGGTTATGCTGATCCTTCTCCATTTGAATGCTACAAAGTCTCGAAGGAAGCTGAAGATTCCCTTGTAGAGGCCATTAGAAGCGGCCACTACAATGGTTATGCTCCAGCAGTTGGCCTTCCAGAAGCGCGAAGGGCAGTGGCAGAGTATCTCTCTCCAGGGCTTCCTTACAAGCTAGGTGCAGATGATATCTACTTAACCTGTGGTTGTAGACAAGCTATGGATGTAACTGTTGCAGTCTTGGGTGGTAAAGATGCAAACATTTTGTTGCCGAGACCAGGGTATCCACTTTATGAAGCATTGTTGGCATACAATGGCATTGAAGCCAGGCACTATAATTTAATTCCAGAAAGGAATTGGGAAATTGATTTAGATCACCTTGAAACAATAGCTGACAGGAACACAGTAGCAATGGTTCTTGTCAATCCCAATAATCCTTGTGGTGTTGTTTTCAGCCATGAGCATTTAGCCAAGGTGGCAGAGACGGCAAAAAAGTTAGGCTTGTTAATTGTTTCTGATGAAGTATATGCTCCCTTGGTGTTTGATAACAAGCCATTTGTACCAATGGGATTGTTTGCAACAGTTGTTCCTGTGCTTACCGTTGGAAGCATATCAAAGAGATGGCTTGTTCCAGGTTGGCGGCTGGGGTGGATTGTGGCTTGTGATCCTAATGGTATTTTAAAAGAAACAAGGATAATAGAAGGCATTAGGAATCTTTTGAATGTGGTTGTCGATCCGGCTACATTTGCACAGGCTGCGCTTCCAAATATCCTGAAAAAGACAACACGAGAATTTTATGAACAGGCATTGCAAACACTTTGTCAAGCAGCTGACATATGCTATAATCGTGCTCAGAAACTTGACGTTCTCTATTGTCTGTCTAAACCTCAGGGTTCTATGTTTTTGATGATCAAGATAAACATTCCTTGCTTTGAAGACATAAATGATGATGTTGAATTTTGTGGGAAACTTGCAAAAGAAGAATCAGTTATAGTTTTACCAGGGTCACTGCTTGGAATGAAGAACTGGATACGCGTGTCTTTTGCAGTCTCCCCATGTTTGTTGGAAGAGGCTTGGGATCGAATAGAATCCTTCTGCAAACGACATGCCAAGAGTACACAGATTATTTAG___ATGAATTAAGTGTAAATACAATGTTGGGAGACACTTCAAAATATAGGGTACTTGTTACAGATTCGGATCATCCTGACTACATATTTATGAACTCGTATTGTTTATTATCCGTAGGTAAGAGAGATTAATGGTATTTGTTGCATTTAGTGCAACTGATCTTATGGGTCAAAAATTCTGAACTTTCAACCCAATGAGTATATTATAGATGAACAGTTCTGCAATCTTCTTGCAACATTTATTTAATTTG

Fln Alignment:

sp_v1.1_unigene8499___CMREMAGIRGMLAYLRSHLDPKGKSVIPLGYADPSPFECYKVSKEAEDSLVEAIRSGHYNGYAPAVGLPEARRAVAEYLSPGLPYKLGADDIYLTCGCRQAMDVTVAVLGGKDANILLPRPGYPLYEALLAYNGIEARHYNLIPERNWEIDLDHLETIADRNTVAMVLVNPNNPCGVVFSHEHLAKVAETAKKLGLLIVSDEVYAPLVFDNKPFVPMGLFATVVPVLTVGSISKRWLVPGWRLGWIVACDPNGILKETRIIEGIRNLLNVVVDPATFAQAALPNILKKTTREFYEQALQTLCQAADICYNRAQKLDVLYCLSKPQGSMFLMIKINIPCFEDINDDVEFCGKLAKEESVIVLPGSLLGMKNWIRVSFAVSPCLLEEAWDRIESFCKRHAKST
B8LLE0______________CSHNMLGIRGVLDYVMSHLNPDGKSKIPLGHGDPSAFECFRTSIHVEDALIEAIRTGKYNGYSPADGLPQSRRVVADYLSRGFPYKLSEDDVYLTCGCSQAIDLALSVLAREGANILLPRPGFPQYEALMAYKGIEARHYDLVPERGWEVDLDQLDAIADSNTVAMVIINPSNPCGTVFTHDHLAKVAETAKRLGLLIISDEVYAHIVFGEKPFIPMGFFASTVPVLTLGSISKKWMVPGWRLGWLVTCDPHGILRKSQIIEGIKKLLNIVVDPSTIAQAALPQIIKKTTEDFDQQTLQLLSQAADICYDRIQKLNVLYCPAKPQGSMFVMVKINISSFVDIRDDIEFSAMLSKEESVIVLQGSPIGLKNWIRVTFAISPSVLEEGLDRITAFCMRHAKNT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
689		81		18	1.0
717		76		23	1.0
753	22	77			0.999999
765			71	28	1.0
777		16		83	0.994512
801	25		75		0.996473
810		50		50	1.0
862		25	75		0.996473
919	33		66		0.997452
940		25		75	0.996473
1254	83	16			0.994512
1255	66		16	16	0.988813
1256			16	83	0.994512
1287		20		80	0.995493
1390		83		16	0.994512
1457			46	53	1.0
1565		44		55	1.0
1601	55		44		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain